View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4849_high_1 (Length: 1100)
Name: NF4849_high_1
Description: NF4849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4849_high_1 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr7 (5 HSPs) |
| |
|
| [»] scaffold0479 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 741; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 741; E-Value: 0
Query Start/End: Original strand, 328 - 1100
Target Start/End: Complemental strand, 12934689 - 12933917
Alignment:
| Q |
328 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934689 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgc |
12934590 |
T |
|
| Q |
428 |
atctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
527 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934589 |
atctgtgtagcctttcaaaagcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
12934490 |
T |
|
| Q |
528 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934489 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
12934390 |
T |
|
| Q |
628 |
ctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggctaacggcgtgctaac |
727 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
12934389 |
ctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgttgagtttaaagtgattggctaacggcgtgctaac |
12934290 |
T |
|
| Q |
728 |
tggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcggtctcgcaaaatcttc |
827 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12934289 |
tggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcggtctcgcaaaatcttc |
12934190 |
T |
|
| Q |
828 |
atgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccacta |
927 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12934189 |
atgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatccttgtcttgccccacta |
12934090 |
T |
|
| Q |
928 |
tcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggcatattcctg |
1027 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
12934089 |
tcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatg |
12933990 |
T |
|
| Q |
1028 |
actcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttc |
1100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12933989 |
actcatcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttc |
12933917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 17124139 - 17123887
Alignment:
| Q |
12 |
ttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtca |
111 |
Q |
| |
|
|||| |||| ||||||||||||| | |||||| ||||||||||| | ||| ||||||||||||| || || ||||||| | ||||||||||||||||| |
|
|
| T |
17124139 |
ttctacttcgatgctttccttcattgccattgactctatttataaga-aaacaagccgtaagagtttgaattagttcaca-attcttacaccaaaagtca |
17124042 |
T |
|
| Q |
112 |
tggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatca |
211 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||| || ||||||||||| ||||||||| ||||||||| | |
|
|
| T |
17124041 |
taacattcaaagtgtgaaacttggaatgaattgcaaacattcacacttttctgctaagcaagataagcctagccatgcctctccaccttaagctatacta |
17123942 |
T |
|
| Q |
212 |
tagctttcctatttgtagaaa--aatgcatccttgcattaaataggtagaagact |
264 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
17123941 |
tagttttcctatttgtagaaaataatgcttccttgcattaaataaatagaagact |
17123887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 17121801 - 17121733
Alignment:
| Q |
198 |
cgtaagctatatcatagctttcctatttgtaga--aaaatgcatccttgcattaaataggtagaagact |
264 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||| |
|
|
| T |
17121801 |
cgtaagctatgccatatctttcctatttgtagaaaaaaatgcttccttgcattaaatacatagaagact |
17121733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 12930390 - 12930336
Alignment:
| Q |
270 |
caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
326 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
12930390 |
caattgcttgtagcaattgtctttggctgg--acataacccacacgtggtggggcca |
12930336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 12935136 - 12935082
Alignment:
| Q |
270 |
caattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
326 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
12935136 |
caattgcttgtagcaattgtctttggctgg--acataacccacacgtggtggggcca |
12935082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 729; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 328 - 1100
Target Start/End: Complemental strand, 14177959 - 14177187
Alignment:
| Q |
328 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177959 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatccgc |
14177860 |
T |
|
| Q |
428 |
atctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
527 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177859 |
atctgtgtagcctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccag |
14177760 |
T |
|
| Q |
528 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177759 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactacatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
14177660 |
T |
|
| Q |
628 |
ctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggctaacggcgtgctaac |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14177659 |
ctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactatgctgagtttaaagtgattggctaacggtgtgctaac |
14177560 |
T |
|
| Q |
728 |
tggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcggtctcgcaaaatcttc |
827 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177559 |
tggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcggtctcgcaaaatcttc |
14177460 |
T |
|
| Q |
828 |
atgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccacta |
927 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14177459 |
atgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccacta |
14177360 |
T |
|
| Q |
928 |
tcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggcatattcctg |
1027 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
14177359 |
tcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattcatg |
14177260 |
T |
|
| Q |
1028 |
actcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttc |
1100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14177259 |
actcatcatgaacgagtcgaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttc |
14177187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 328 - 1100
Target Start/End: Original strand, 28607914 - 28608688
Alignment:
| Q |
328 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28607914 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcctgaagtagactttctaccatccaggtcacctgccatatcagc |
28608013 |
T |
|
| Q |
428 |
atctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
527 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608014 |
atctgtgtaggctttcaaaatcgaatttgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
28608113 |
T |
|
| Q |
528 |
tgttctttt-cccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaact |
626 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608114 |
tgttctttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaact |
28608213 |
T |
|
| Q |
627 |
gctgaggagtaaggtattgcaaccatagcttctttt-tcatcttgactagtaggacaactcactctgctgagtttaaagtgattggctaacggcgtgcta |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608214 |
gctgaggagtaaggtattgcaaccatagcttcttttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggctaacggcgtgcta |
28608313 |
T |
|
| Q |
726 |
actggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcggtctcgcaaaatct |
825 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608314 |
actggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcggtctcgcaaaatct |
28608413 |
T |
|
| Q |
826 |
tcatgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccac |
925 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608414 |
tcatgcctaagatttgctttgcagggcctagatttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccac |
28608513 |
T |
|
| Q |
926 |
tatcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggcatattcc |
1025 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28608514 |
tatcaacatatcatctacatataacagaatgatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggtatattca |
28608613 |
T |
|
| Q |
1026 |
tgactcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttc |
1100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28608614 |
tgactcatcatgaacgagtcaaatttcttataccattgtcttggtgcttgttttaatccatacaagctcttcttc |
28608688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 28607196 - 28607521
Alignment:
| Q |
1 |
tgtattctcacttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttac |
100 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607196 |
tgtattttcacttctgcttcgatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttac |
28607295 |
T |
|
| Q |
101 |
accaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgt |
200 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607296 |
accaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgt |
28607395 |
T |
|
| Q |
201 |
aagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctgga |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28607396 |
aagctataccatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctgga |
28607495 |
T |
|
| Q |
301 |
aacaatacccacacgtggtggggcca |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28607496 |
aacaatacccacacgtggtggggcca |
28607521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 28611958 - 28612283
Alignment:
| Q |
1 |
tgtattctcacttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttac |
100 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28611958 |
tgtattttcacttctgcttcgatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttac |
28612057 |
T |
|
| Q |
101 |
accaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgt |
200 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612058 |
accaaaagtcatgacattcagagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgt |
28612157 |
T |
|
| Q |
201 |
aagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctgga |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28612158 |
aagctataccatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctgga |
28612257 |
T |
|
| Q |
301 |
aacaatacccacacgtggtggggcca |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28612258 |
aacaatacccacacgtggtggggcca |
28612283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 645; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 328 - 1100
Target Start/End: Complemental strand, 15300475 - 15299703
Alignment:
| Q |
328 |
atttttgcaatttagattgccaagatacagctccccctgcaaaagtaaacacaattcttgaagtagactttctaccatccaggtcacctgccatatccgc |
427 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300475 |
atttttgcaatttagattgccaagatatagctcaccctgcaaaagcaaacacaattcctgaagcagactttctaccatccaggtcacctgccatatccgc |
15300376 |
T |
|
| Q |
428 |
atctgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacagcttcccaa |
527 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15300375 |
atatgtgtagcctttcaaaatcgaatctgatcctccaaagcataagcacttattagagcttcctttcagatacctcaagatccacttcacaacttcccaa |
15300276 |
T |
|
| Q |
528 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
627 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300275 |
tgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctggtgcaaaccattgcatacatcaaactcccaactg |
15300176 |
T |
|
| Q |
628 |
ctgaggagtaaggtattgcaaccatagcttctttttcatcttgactagtaggacaactcactctgctgagtttaaagtgattggctaacggcgtgctaac |
727 |
Q |
| |
|
||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15300175 |
ctgaggagtaaggtatttcagccatagcttgttttttatcttgactagtaggacaacttactctactgagtttaaagtgattggctaacggcgtgctaac |
15300076 |
T |
|
| Q |
728 |
tggtttagcacccttcatgttgaatctttctagaacccggtccacatactgttgttgtgacaaccatagctttctagcttttcggtctcgcaaaatcttc |
827 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
15300075 |
tagtttagcaccctttatgttgaatctttctagaacccgttccacttactgttgttgtgacaaccatagctttctagatttccggtctcgcaaagtcttc |
15299976 |
T |
|
| Q |
828 |
atgcctaagatttgctttgcagggcctaggtttttcatgtcaaaggattttgacaattccttcttcaaatcaccaatcatatcctcgtcttgccccacta |
927 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299975 |
atgcctaagatttgctttgcagggcctagatttttcatgtcgaaggattttgacaattcatttttcaaatcaccaatcatatcctcgtcttgccccacta |
15299876 |
T |
|
| Q |
928 |
tcaacatatcatctacatataacagaaggatgatgaatttgttacctcgaaatgttttgacatatacacaatgatctgcatctgtcttggcatattcctg |
1027 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
15299875 |
tcaacttatcatctacatataacagaaggatgataaatttgttacctcgaaatattttgacatatacacaatgatctgcatctgtcttggtatattcatg |
15299776 |
T |
|
| Q |
1028 |
actcatcatgaacgagtcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttcttc |
1100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
15299775 |
actcatcatgaacgagtaaaatttcttataccattgtcttggtgcttgtcttaatccatacaagctcttcttc |
15299703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37040816 - 37040927
Alignment:
| Q |
1 |
tgtattctcacttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatga-gccgtaagagttggatttggttcacacactctta |
99 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| | ||||| ||||||||||| | ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37040816 |
tgtattttcacttctgcttcaatgctttccttcactatcattgtctctatttataagagaaatgaagccgtaagagttggatttggttcacacactctta |
37040915 |
T |
|
| Q |
100 |
caccaaaagtca |
111 |
Q |
| |
|
||| |||||||| |
|
|
| T |
37040916 |
cactaaaagtca |
37040927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 495 - 631
Target Start/End: Complemental strand, 6692801 - 6692665
Alignment:
| Q |
495 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
594 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
6692801 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
6692702 |
T |
|
| Q |
595 |
tgcaaaccattgcatacatcaaactcccaactgctga |
631 |
Q |
| |
|
| ||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
6692701 |
tacaaaccattgcgtacatcaaacttccaattgctga |
6692665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 570 - 616
Target Start/End: Original strand, 33415690 - 33415736
Alignment:
| Q |
570 |
actgcatgagcaatatctggcctggtgcaaaccattgcatacatcaa |
616 |
Q |
| |
|
||||||||||| |||||||| || ||||||||||||||||||||||| |
|
|
| T |
33415690 |
actgcatgagctatatctggtctagtgcaaaccattgcatacatcaa |
33415736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1044 - 1099
Target Start/End: Complemental strand, 6692255 - 6692200
Alignment:
| Q |
1044 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
1099 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
6692255 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
6692200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 26 - 326
Target Start/End: Complemental strand, 34907056 - 34906756
Alignment:
| Q |
26 |
tttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatggtattcaaagtg |
125 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
34907056 |
tttctttcaattctattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttacaccaaaagtcatgacattcagagtg |
34906957 |
T |
|
| Q |
126 |
tgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctatatcatagctttcctattt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34906956 |
tgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgtaagctataccatagctttcctattt |
34906857 |
T |
|
| Q |
226 |
gtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcc |
325 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34906856 |
gtagaaaaattcatccttgcattaaataggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcc |
34906757 |
T |
|
| Q |
326 |
a |
326 |
Q |
| |
|
| |
|
|
| T |
34906756 |
a |
34906756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 8539158 - 8538835
Alignment:
| Q |
1 |
tgtattctcacttctgcttcaatgctttccttcaattccattgcctctatttataggggaaatgagccgtaagagttggatttggttcacacactcttac |
100 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| | |||||||| ||||||| |
|
|
| T |
8539158 |
tgtattttcacttctgcttcgatgctttccttcaattccat-gcctctatttataggggaaataagccataagagttggaaatagttcacac-ctcttac |
8539061 |
T |
|
| Q |
101 |
accaaaagtcatggtattcaaagtgtgaaacttgaaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccaccgt |
200 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8539060 |
accaaaagtcatgacattcagagtgtgaaacttggaatgaattgcaagccttcacacttttctgcacagcaagctatgcctagccatgtctctccacctt |
8538961 |
T |
|
| Q |
201 |
aagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaa-ttacttgtagtaattgtctttggctgg |
299 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| || ||| || |||||||||||||||||||| |
|
|
| T |
8538960 |
aagctataccatagctttcctatttgtagaaaaatgcatcattgcattaaatgagtagaagactagttataatttatttatagtaattgtctttggctgg |
8538861 |
T |
|
| Q |
300 |
aaacaatacccacacgtggtggggcca |
326 |
Q |
| |
|
|||| |||||||| |||||||||||| |
|
|
| T |
8538860 |
-aacagtacccacatgtggtggggcca |
8538835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 8e-67; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 181 - 326
Target Start/End: Complemental strand, 2308905 - 2308760
Alignment:
| Q |
181 |
tagccatgtctctccaccgtaagctatatcatagctttcctatttgtagaaaaatgcatccttgcattaaataggtagaagactatttacaattacttgt |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308905 |
tagccatgtctctccaccgtaagctataccatagttttcctatttatagaaaaatacatccttgcattaaataggtagaagactatttacaattacttgt |
2308806 |
T |
|
| Q |
281 |
agtaattgtctttggctggaaacaatacccacacgtggtggggcca |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2308805 |
agtaattgtctttggctggaaacaatacccacacgtggtggggcca |
2308760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 495 - 631
Target Start/End: Original strand, 796020 - 796156
Alignment:
| Q |
495 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
594 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
796020 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
796119 |
T |
|
| Q |
595 |
tgcaaaccattgcatacatcaaactcccaactgctga |
631 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
796120 |
tacaaaccattgcatacatcaaacttccaattgctga |
796156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 495 - 631
Target Start/End: Complemental strand, 8273768 - 8273632
Alignment:
| Q |
495 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
594 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
8273768 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
8273669 |
T |
|
| Q |
595 |
tgcaaaccattgcatacatcaaactcccaactgctga |
631 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
8273668 |
tacaaaccattgcatacatcaaacttccaattgctga |
8273632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1044 - 1099
Target Start/End: Original strand, 796566 - 796621
Alignment:
| Q |
1044 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
1099 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
796566 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
796621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1044 - 1099
Target Start/End: Complemental strand, 8273261 - 8273206
Alignment:
| Q |
1044 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
1099 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
8273261 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
8273206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 495 - 631
Target Start/End: Complemental strand, 19944751 - 19944615
Alignment:
| Q |
495 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
594 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| |||| || ||||| || | |||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
19944751 |
agatacctcaaaatccatttaaccgcttcccaatgagctttacctggatttgacataaacctgctaacaactcccactgcatggccaatgtctggccttg |
19944652 |
T |
|
| Q |
595 |
tgcaaaccattgcatacatcaaactcccaactgctga |
631 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||| |
|
|
| T |
19944651 |
tacaaaccattgcatacatcaaacttccaattgctga |
19944615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1044 - 1099
Target Start/End: Complemental strand, 19944205 - 19944150
Alignment:
| Q |
1044 |
tcaaatttcttataccattgtctaggtgcttgttttaatccatacaagctcttctt |
1099 |
Q |
| |
|
||||| ||| ||||||||||||| || |||||||||| ||||||||||||||||| |
|
|
| T |
19944205 |
tcaaacttcatataccattgtcttggagcttgttttaggccatacaagctcttctt |
19944150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 51298598 - 51298526
Alignment:
| Q |
254 |
ggtagaagactatttacaattacttgtagtaattgtctttggctggaaacaatacccacacgtggtggggcca |
326 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| |
|
|
| T |
51298598 |
ggtagaaaactatttgcaattacttgtagtaattgtttttggccagaaacaatagccacacgtggtggggcca |
51298526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 495 - 613
Target Start/End: Original strand, 54968395 - 54968513
Alignment:
| Q |
495 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
594 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||||| |||||||| ||||| || || || || || |||||||| || |||| |||||| ||||| || | |
|
|
| T |
54968395 |
agatacctcaatatccatttcacagcattccaatgctcttttcctggattcgacaggaatctactcacaactcctaccgcataagcaatgtctggtcttg |
54968494 |
T |
|
| Q |
595 |
tgcaaaccattgcatacat |
613 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
54968495 |
tgcaaaccattgcgtacat |
54968513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 495 - 613
Target Start/End: Complemental strand, 1752 - 1634
Alignment:
| Q |
495 |
agatacctcaagatccacttcacagcttcccaatgttcttttcccggattggaaagaaacctgctaacaactccaactgcatgagcaatatctggcctgg |
594 |
Q |
| |
|
||||||||||| ||||| |||||| | | |||||| |||||||| ||||| || || || || || |||||||| || |||| |||||| ||||| || | |
|
|
| T |
1752 |
agatacctcaatatccatttcacatcattccaatgctcttttcctggattcgacaggaatctactcacaactcctaccgcataagcaatgtctggtcttg |
1653 |
T |
|
| Q |
595 |
tgcaaaccattgcatacat |
613 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
1652 |
tgcaaaccattgcgtacat |
1634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University