View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4849_low_2 (Length: 738)
Name: NF4849_low_2
Description: NF4849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4849_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 3546768 - 3547097
Alignment:
| Q |
13 |
aatatttgatgaagttccaacaaactcttctcaatctctttagcagcatcatgtctgtcttgtatctcaaccacagtttccagaacctttcctcttccat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3546768 |
aatatttgatgaagttccaacaaactcttctcaatctctttagcagcatcatgtctgtcttgtatctcaaccacagtttccagaacctttcctcttccat |
3546867 |
T |
|
| Q |
113 |
gttcttgtattgccttccctaagaaactttcatcatctccatttgaaattatcttctcaattacctcttcatcagcatgttcccctgtcactgtgtaata |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3546868 |
gttcttgtattgccttccctaagaaactttcatcatctccatttgaaattatcttctcaattacctcttcatcagcatgttcccctgtcactgtgtaata |
3546967 |
T |
|
| Q |
213 |
ccttctcccaactgtttctttgtattcactcatcattttctgcctaagtccctgttgtaatatacaaggtttcataaattgtgatgagtgtaatgttaca |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3546968 |
ccttctccctactgtttctttgtattcactcatcattttctgcctaagtccctgttgttatatacaaggtttcataaattgtgatgagtgtaatgttaca |
3547067 |
T |
|
| Q |
313 |
agatacacaacatactaaaactaaatattc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3547068 |
agatacacaacatactaaaactaaatattc |
3547097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 422 - 720
Target Start/End: Original strand, 3547175 - 3547473
Alignment:
| Q |
422 |
gagaaattgacaagggtatctacctgaaactccatcataagctccttgagtttcttacgcaagccattagtaacagcaattctagttctataaattgctg |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3547175 |
gagaaattgacaagggtatctacctgaaactccatcataagctccttgagtttcttacgcaagccattagtaacagcaattctagttctataaattgctg |
3547274 |
T |
|
| Q |
522 |
gtgaaccatctttaagtccagagagtcttctattagcagcattagcacgatccatttcttcaagttgagtcctaatacactttgctttcttcaaaacagt |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3547275 |
gtgaaccatctttaagtccagagagtcttctattagcagcattagcacgatccatttcttcaagttgagtcctaatacactttgctttcttcaaaacagt |
3547374 |
T |
|
| Q |
622 |
cacaatatcagtattaattctttccctcaatgctttcaaagcttcagttttgtgaagactcttgctctcttcatttgcttgttcaagctttgtaagtat |
720 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3547375 |
cacaatatcagtattaattctttccctcaatgctttcaaagcttcagttttgtgaagactcttgctctcttcatttgcttgttcaagctttgttagtat |
3547473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University