View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4849_low_4 (Length: 468)
Name: NF4849_low_4
Description: NF4849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4849_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Complemental strand, 5714757 - 5714318
Alignment:
| Q |
11 |
cacagaagaaaattttatgagcagcattataaatgttttcgtgtttgtgtcagttgtgtgcagctcatattacacttatatatgcatacattattgttgc |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
5714757 |
cacagaagaaaattttatgagcaacattataaatgttttcgtgtttgtgtcagttgtgtgcagctcatattacacttatatatgcatgcattattgttac |
5714658 |
T |
|
| Q |
111 |
ttacttgatatcccaatcattatacacatatactttaaaattcatacttactctagaaggactaaagcttgcagctgcaattggtgctccaagcactgtg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5714657 |
ttacttgatatcccaatcattatacacatatactttaaaattcacacttactctagaaggactaaagcttgcagctgcaattggtgctccaagcactgtg |
5714558 |
T |
|
| Q |
211 |
aacactgccaaccagagacctccaaggcgaagaaagaacgaccctggacccagttcgccccatgaatacagcattccatccttcaaagatgagtactcat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5714557 |
aacactgccaaccagagacctccaaggcgaagaaagaacgaccctggacccagttcgccccatgaatacagcattccatccttcaaagatgagtactcat |
5714458 |
T |
|
| Q |
311 |
ttacctattagaccatgacatattccaagttagcatgagatgttcaaagaaacacttttgagtgggacaatcatgttaactaatagtatattcttattac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5714457 |
ttacctattagaccatgacatattccaagttagcatgagatgttcaaagaaacacttttgagtgggacaatcatgttaactaatagtatattcttattac |
5714358 |
T |
|
| Q |
411 |
ttcgcatcaaccgtttcagtttgtatgtgtgtgcagggat |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5714357 |
ttcgcatcaaccgtttcagtttgtatgtgtgtgcagggat |
5714318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University