View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4849_low_7 (Length: 201)
Name: NF4849_low_7
Description: NF4849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4849_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 3546791 - 3546591
Alignment:
| Q |
1 |
tttgttggaacttcatcaaatatttttggatatggctgtgatggttgaagcacaaggtgagaaaatggatgatattgaacatcatgttcttcatgcttct |
100 |
Q |
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| T |
3546791 |
tttgttggaacttcatcaaatatttttggatatggctgttatggttgaagcacaaggtgagaaaatggatgatattgaacatcatgttcttcatgcttct |
3546692 |
T |
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| Q |
101 |
cattatgttaaagatggtacaaagaatcttcacggtgctaaacagtatcagaaaagtagcaggaagtggatgtgcattgggattatactcttgcttattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3546691 |
cattatgttaaagatggtacaaagaatcttcacggtgctaaacagtatcaaaaaagtagcaggaagtggatgtgcattgggattatactcttgcttattc |
3546592 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
3546591 |
t |
3546591 |
T |
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