View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4849_low_8 (Length: 201)
Name: NF4849_low_8
Description: NF4849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4849_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 38710863 - 38711047
Alignment:
| Q |
1 |
tggagaatgtgtaggggcagtccatccggtagcacttggtgtcggagcattccaagccgatgattgtgttggagaatgtgcaggagcagtccaaccggta |
100 |
Q |
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| T |
38710863 |
tggagaatgtgtaggggcagtccaaccggtagcacttggtgtcggagcattccaacccgatgattttgttggagaatgtgcaggagcagtccaaccggta |
38710962 |
T |
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| Q |
101 |
gcacttggtgaaggagcatgccaagccggtgattgtgttggagagtgtgccggagtagtccaaccggtggcacttggtgaagaag |
185 |
Q |
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| T |
38710963 |
gcacttggtgaaggagcatgccaagccggtgattgtgttggagagtgtgtcggagtagtccaaccggtagcacttggtgaagaag |
38711047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 38710932 - 38711113
Alignment:
| Q |
1 |
tggagaatgtgtaggggcagtccatccggtagcacttggtgtcggagcattccaagccgatgattgtgttggagaatgtgcaggagcagtccaaccggta |
100 |
Q |
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| T |
38710932 |
tggagaatgtgcaggagcagtccaaccggtagcacttggtgaaggagcatgccaagccggtgattgtgttggagagtgtgtcggagtagtccaaccggta |
38711031 |
T |
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| Q |
101 |
gcacttggtgaaggagcatgccaagccggtgattgtgttggagagtgtgccggagtagtccaaccggtggcacttggtgaag |
182 |
Q |
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| T |
38711032 |
gcacttggtgaagaagcactccaagtcggtgattgtgttggggagtgtgcgggagcagtccagccggtagcacttggtgaag |
38711113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 38710827 - 38710975
Alignment:
| Q |
34 |
acttggtgtcggagcattccaagccgatgattgtgttggagaatgtgcaggagcagtccaaccggtagcacttggtgaaggagcatgccaagccggtgat |
133 |
Q |
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| T |
38710827 |
acttggtgtcggagcattccaagctgatgattgtgctggagaatgtgtaggggcagtccaaccggtagcacttggtgtcggagcattccaacccgatgat |
38710926 |
T |
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| Q |
134 |
tgtgttggagagtgtgccggagtagtccaaccggtggcacttggtgaag |
182 |
Q |
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| T |
38710927 |
tttgttggagaatgtgcaggagcagtccaaccggtagcacttggtgaag |
38710975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 38711001 - 38711143
Alignment:
| Q |
1 |
tggagaatgtgtaggggcagtccatccggtagcacttggtgtcggagcattccaagccgatgattgtgttggagaatgtgcaggagcagtccaaccggta |
100 |
Q |
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| T |
38711001 |
tggagagtgtgtcggagtagtccaaccggtagcacttggtgaagaagcactccaagtcggtgattgtgttggggagtgtgcgggagcagtccagccggta |
38711100 |
T |
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| Q |
101 |
gcacttggtgaaggagcatgccaagccggtgattgtgttggag |
143 |
Q |
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| T |
38711101 |
gcacttggtgaaggagcattccaaaccggtgattgtgttggag |
38711143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 38711086 - 38711239
Alignment:
| Q |
17 |
gcagtccatccggtagcacttggtgtcggagcattccaagccgatgattgtgttggagaatgtgcaggagcagtccaaccggtagcacttggtgaaggag |
116 |
Q |
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| T |
38711086 |
gcagtccagccggtagcacttggtgaaggagcattccaaaccggtgattgtgttggag------------cagtcttgctggtagcacttggtgaaggag |
38711173 |
T |
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| Q |
117 |
catgccaagccggtgattgtgttggagagtgtgccggagtagtccaaccggtggcacttggtgaag |
182 |
Q |
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| T |
38711174 |
ccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaag |
38711239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 38711154 - 38711245
Alignment:
| Q |
28 |
ggtagcacttggtgtcggagcattccaagccgatgattgtgttggagaatgtgcaggagcagtccaaccggtagcacttggtgaaggagcat |
119 |
Q |
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| T |
38711154 |
ggtagcacttggtgaaggagccttccaagcaggtgattgtgatggggagtgtgttggagcattccaaccgatagcacttggtgaaggagcat |
38711245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 39705050 - 39704953
Alignment:
| Q |
44 |
ggagcattccaagccgatgattgtgttggagaatgtgcaggagcagtccaaccggtagcacttggtgaaggagcatgccaagccggtgattgtgttgg |
141 |
Q |
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| T |
39705050 |
ggagcattccaagctggcgattgtactggggagtgtgccggagcagtccagacaatagcacttggtgagggagcattccaagctggtggttgtgttgg |
39704953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 39704878 - 39704825
Alignment:
| Q |
102 |
cacttggtgaaggagcatgccaagccggtgattgtgttggagagtgtgccggag |
155 |
Q |
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| T |
39704878 |
cacttgatgagggagcattccaagccggtggttgtgttggggagcgtgccggag |
39704825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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