View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850-Insertion-1 (Length: 917)
Name: NF4850-Insertion-1
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 154 - 609
Target Start/End: Original strand, 34932643 - 34933098
Alignment:
| Q |
154 |
attcttctcactttctatttcatcaagccattgctgaagcgataccagttcgggatcctgtgggtttaaagagtaagtaatattaaagaactagaatacg |
253 |
Q |
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||||||||||| |||||||| ||||||| || |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34932643 |
attcttctcacattctattttatcaagcattttctgaagcgatgccagttcgagatcctgtgggtttaaagagtaagtaatattaaagaactagaatacg |
34932742 |
T |
|
| Q |
254 |
cacaaagaaactaaaatagtgaaactagaattaaaagaaagcatttgctacaggccccagaaaagcttgcctcggctttaaacacaggaatgttgtcgaa |
353 |
Q |
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||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34932743 |
cacaaagaatctaaaattgtgaaactagaatcaaaagaaagcatttgctacaggccccagaaaagcttgcctcggctttaaacacaggaaggttgtcgaa |
34932842 |
T |
|
| Q |
354 |
catgtgcgcaggagttattccgtgtgcgtatctcgatgggcatcccgctgagtatctcatctttgcgctatagatgttgaagatttgggagagagtcggc |
453 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34932843 |
catgtgcgcaggagttattccgtgtgtgtatctcgatgggcatcccgctgagtatctcatctttgcactatagatgttgaagatttgggagagagtcggc |
34932942 |
T |
|
| Q |
454 |
ttcgcagataatatgaaagaacagaattgttagatggtaattagatgatgatgatgatatgtactaattaattaaacacactctatcaaaactaatataa |
553 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34932943 |
ttcgcagataatatgaaagaacaaaattgttagatggtaattagatgatgatgatgatatgtactaattaattaaacacactctatcaaaactaatataa |
34933042 |
T |
|
| Q |
554 |
tcattccatcaaagaagagaaaatcccgaattcataaggtttaaaccctaaccccc |
609 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34933043 |
tcattccatcaaagaagagaaaatcccgaattcacaaggtttaaaccctaaccccc |
34933098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 691 - 912
Target Start/End: Original strand, 34933180 - 34933402
Alignment:
| Q |
691 |
acttacatacatacctgcaaccctagaagaagaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagccctga |
790 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34933180 |
acttacatacatacctgcaaccctagaagaacaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaag-cctga |
34933278 |
T |
|
| Q |
791 |
gcctctctatttatgaatgaacatgtgccatttacacgagagaatattcaaacctctcctgttcttttttggaa--ggttttcattgttttcatgccttc |
888 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||| |
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| T |
34933279 |
gcctctctatttatgaatgaacatgtgccctttacacgagagaatattcaaacctctcctgttcttttttgtaagtgtttttcattgttttcaagccttc |
34933378 |
T |
|
| Q |
889 |
gttacttgaaatcattccatgaga |
912 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
34933379 |
attacttgaaatcattccatgaga |
34933402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 706 - 787
Target Start/End: Original strand, 34926734 - 34926817
Alignment:
| Q |
706 |
tgcaaccctagaagaagaagtgt--gtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagccc |
787 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
34926734 |
tgcaacccgagaagaacaagtgtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatatttccaaacccaagccc |
34926817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 34932538 - 34932579
Alignment:
| Q |
60 |
ttaaacttgaatcaaaagcattgctaaagggcccataacaat |
101 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
34932538 |
ttaaatttgaatcaaaagcattgctaaagagcccataacaat |
34932579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 34119065 - 34119028
Alignment:
| Q |
52 |
taaaattgttaaacttgaatcaaaagcattgctaaagg |
89 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||| |
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| T |
34119065 |
taaaattgtgaaacttgaatcaaaatcattgctaaagg |
34119028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 34146224 - 34146187
Alignment:
| Q |
52 |
taaaattgttaaacttgaatcaaaagcattgctaaagg |
89 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||| |
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| T |
34146224 |
taaaattgtgaaacttgaatcaaaatcattgctaaagg |
34146187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 34158840 - 34158803
Alignment:
| Q |
52 |
taaaattgttaaacttgaatcaaaagcattgctaaagg |
89 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||| |
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| T |
34158840 |
taaaattgtgaaacttgaatcaaaatcattgctaaagg |
34158803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 38648661 - 38648698
Alignment:
| Q |
50 |
actaaaattgttaaacttgaatcaaaagcattgctaaa |
87 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |
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| T |
38648661 |
actaaaattgtgaaacttgaatcaaaagcattgctaaa |
38648698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 38648614 - 38648688
Alignment:
| Q |
216 |
ggtttaaagagtaagtaatattaaagaactagaatacgcacaaagaaactaaaatagtgaaactagaattaaaag |
290 |
Q |
| |
|
|||||| ||| ||| ||||||||||||| | |||| | |||||||||||||||| |||||||| |||| ||||| |
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| T |
38648614 |
ggtttatagattaattaatattaaagaattcaaatatgaacaaagaaactaaaattgtgaaacttgaatcaaaag |
38648688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 48430881 - 48430914
Alignment:
| Q |
50 |
actaaaattgttaaacttgaatcaaaagcattgc |
83 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
48430881 |
actaaaattgtgaaacttgaatcaaaagcattgc |
48430914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 52805612 - 52805645
Alignment:
| Q |
56 |
attgttaaacttgaatcaaaagcattgctaaagg |
89 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
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|
| T |
52805612 |
attgtaaaacttgaatcaaaagcattgctaaagg |
52805645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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