View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850-Insertion-4 (Length: 446)
Name: NF4850-Insertion-4
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 11618813 - 11618590
Alignment:
| Q |
16 |
gttggagggaagctaaaatttctggactaagttaatcttcaccatataatttttgtaaacaatcacaatacttatacttaaatgcatgcatatgtaactt |
115 |
Q |
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| T |
11618813 |
gttggagggaagctaaaatttctggactaagttaatcttcaccatataatttttgtaaacaatcacaatacttatacttaaatgcatgcatatgtaactt |
11618714 |
T |
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| Q |
116 |
tggactttgaggagattactactttgacattcaaaataatttgtagcgttgaaaatgaacatatcatccnnnnnnngacatagggtaaaaccacaaacat |
215 |
Q |
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| T |
11618713 |
tggactttgaggagattactactttgacattcaaaataatttgtagcgttgaaaatgaacatatcatccaaaaaaagacatagggtaaaaccacaaacat |
11618614 |
T |
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| Q |
216 |
ttaacatctcaacttctctaccgt |
239 |
Q |
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| T |
11618613 |
ttaacatctaaacttctctcccgt |
11618590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 241 - 423
Target Start/End: Complemental strand, 11618554 - 11618372
Alignment:
| Q |
241 |
aacatattgtccagttgaatttcagccacttgtctttttctattaattgatgtttcaataattaaaaagaatataaacaatgtgcatcgaaatccctctg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11618554 |
aacatattgtccagttgaatttcagccacttgtctttttctattaattgaagtttcaataattaaaaagaatataaacaatgtgcatcgaaatccctctg |
11618455 |
T |
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| Q |
341 |
ttcaaaacctcataggagagaatttatgtccgctttaatctttaaatttctcaaattgaattagccacctaagattttcttcg |
423 |
Q |
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| T |
11618454 |
ttcaaaacctcataggagagagtttatgtccgctttaatctttaaatttctcaaattgaattagccacctaagattttgttcg |
11618372 |
T |
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