View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850-Insertion-9 (Length: 205)
Name: NF4850-Insertion-9
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850-Insertion-9 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 2472305 - 2472107
Alignment:
| Q |
7 |
atgaatgaattaagagaatttcaacaatggttgcgacagnnnnnnnccgtaagaaacgaagaagaaaaatgagggccgcgtcaggttcaagtttaccaga |
106 |
Q |
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| T |
2472305 |
atgaatgagttaagagaatttcaacaatggttgcgacagaaaaaaaccgtaagaaacgaagaagaaaaatgaaggccgcatcaggttcaagtttaccaga |
2472206 |
T |
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| Q |
107 |
ggaaatatgggagagcatcttcaaattcctcgacgacaacaaccagactttcaaatctctttccatggtctccaaacagtttttctccaccaccaatcg |
205 |
Q |
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| T |
2472205 |
ggaaatatgggagagcatcttcaaattccttgacgacaacaaccagactttcaaatctctttccatggtctccaaacagtttttctccatcaccaatcg |
2472107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 56 - 205
Target Start/End: Complemental strand, 2460761 - 2460612
Alignment:
| Q |
56 |
taagaaacgaagaagaaaaatgagggccgcgtcaggttcaagtttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaacaaccagact |
155 |
Q |
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| T |
2460761 |
taagaaacgaacaacaaaaatgaaggccgcatcatgttcacatttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaaccaccacact |
2460662 |
T |
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| Q |
156 |
ttcaaatctctttccatggtctccaaacagtttttctccaccaccaatcg |
205 |
Q |
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| T |
2460661 |
ttcaaatctctctccatggtctccaaacagttcctctccatcaccaatcg |
2460612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 12124952 - 12124907
Alignment:
| Q |
98 |
tttaccagaggaaatatgggagagcatcttcaaattcctcgacgac |
143 |
Q |
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| T |
12124952 |
tttaccagatgagatatgggagatcatcttcaaattcctcaacgac |
12124907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 2467724 - 2467676
Alignment:
| Q |
98 |
tttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaac |
146 |
Q |
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| T |
2467724 |
tttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaac |
2467676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 5035862 - 5035810
Alignment:
| Q |
91 |
gttcaagtttaccagaggaaatatgggagagcatcttcaaattcctcgacgac |
143 |
Q |
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| T |
5035862 |
gttcaaatttaccagaggatttatgggaaaacatcttcaaattcctcaacgac |
5035810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 39516979 - 39516875
Alignment:
| Q |
98 |
tttaccagaggaaatatgggagagcatcttcaaattcctcgacgacaacaaccagactttcaaatctctttccatggtctccaaacagtttttctccacc |
197 |
Q |
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| T |
39516979 |
tttaccggaggatatatgggagtctatcttcaaattcctcgacggtgacaaccacactttcaagtctctctccatcgtctccagacaatttctcgccatc |
39516880 |
T |
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| Q |
198 |
accaa |
202 |
Q |
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| T |
39516879 |
accaa |
39516875 |
T |
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