View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_high_10 (Length: 520)
Name: NF4850_high_10
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 205 - 503
Target Start/End: Complemental strand, 38458598 - 38458305
Alignment:
| Q |
205 |
aacttaaaagaaccaatttattacgattaaataacttaaataatctatgttttaatttagtctaatgattgttgtcactcatcttattatttgtctgtct |
304 |
Q |
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| T |
38458598 |
aacttaaaa-aaccaatttattacaattaaataaattaaataa-ctatgttttaatttagtctaatgattgttgtcactcat---attatttgtctgtct |
38458504 |
T |
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| Q |
305 |
tgtttggttattttaagtatactatatagctatcaattttgatttttgactaaagcttgttgggtttgtttgatgggactatgttttagcccagaaaaaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38458503 |
tgtttggttattttaagtatactatatagctatcaattttgatttttgactaaagcttgttgggtttgtttgatgggactatgttttagccttgaaaaaa |
38458404 |
T |
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| Q |
405 |
ctacacatgcagttgagaaaaatttgaccattttggccttgtccatatttttaagtggaacgatctaagcttgtttgaatcttagtgtgacaagaaact |
503 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38458403 |
ctacacatgcagttgagaaaaacttgaccattttggccttgtccatatttttaagtggaacgatctaagcttgtttgaatcttagtgtgacaagaaact |
38458305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 38459684 - 38459560
Alignment:
| Q |
2 |
cagatgttgatttcaacttatgtcagaagtttttattcgaaaatcttggtcattgtaagatcatacaaaaacttctgatttcacacatacttatttgaaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38459684 |
cagatgttgatttcaacttatgtcagaagtttttattcgaaaatcttggtcattgtaagatcatacaaaaacttctgatttcacacatacttatttgaaa |
38459585 |
T |
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| Q |
102 |
aaattattttaggttactctaaaac |
126 |
Q |
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| T |
38459584 |
aaattattttaggttactctaaaac |
38459560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 38459541 - 38459501
Alignment:
| Q |
127 |
gtgttattaaatagctgctacagcgccgctatactgctata |
167 |
Q |
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| T |
38459541 |
gtgttattaaatagctgctacagcgccgctatactgctata |
38459501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 45445021 - 45444991
Alignment:
| Q |
216 |
accaatttattacgattaaataacttaaata |
246 |
Q |
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| T |
45445021 |
accaatttattacgattaaataacttaaata |
45444991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 8198452 - 8198419
Alignment:
| Q |
211 |
aaagaaccaatttattacgattaaataacttaaa |
244 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
8198452 |
aaagaaccaatttattacaattaaataacttaaa |
8198419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 8203212 - 8203179
Alignment:
| Q |
211 |
aaagaaccaatttattacgattaaataacttaaa |
244 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
8203212 |
aaagaaccaatttattacaattaaataacttaaa |
8203179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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