View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4850_high_12 (Length: 509)

Name: NF4850_high_12
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4850_high_12
NF4850_high_12
[»] chr4 (5 HSPs)
chr4 (113-276)||(1980981-1981144)
chr4 (351-494)||(1981465-1981608)
chr4 (133-258)||(39634640-39634767)
chr4 (7-53)||(1980876-1980922)
chr4 (194-260)||(33906245-33906312)
[»] chr7 (3 HSPs)
chr7 (133-276)||(1097929-1098073)
chr7 (16-53)||(1098149-1098186)
chr7 (176-237)||(38177860-38177921)
[»] chr2 (7 HSPs)
chr2 (134-260)||(32491409-32491537)
chr2 (133-265)||(37098273-37098406)
chr2 (143-276)||(15749444-15749576)
chr2 (16-53)||(32491614-32491651)
chr2 (16-53)||(37098173-37098210)
chr2 (17-53)||(19920450-19920486)
chr2 (167-235)||(37225664-37225732)
[»] chr1 (4 HSPs)
chr1 (133-276)||(4126140-4126285)
chr1 (132-276)||(21907893-21908039)
chr1 (16-53)||(4126026-4126063)
chr1 (16-53)||(21908115-21908152)
[»] chr5 (3 HSPs)
chr5 (133-236)||(8874597-8874700)
chr5 (133-266)||(6276611-6276745)
chr5 (136-276)||(29952719-29952863)
[»] chr6 (3 HSPs)
chr6 (133-276)||(6552800-6552945)
chr6 (135-260)||(30767546-30767672)
chr6 (16-53)||(30767749-30767786)
[»] chr3 (3 HSPs)
chr3 (172-254)||(45012325-45012408)
chr3 (172-236)||(45858175-45858239)
chr3 (17-53)||(45899857-45899893)
[»] chr8 (3 HSPs)
chr8 (194-260)||(35958146-35958213)
chr8 (172-237)||(29456626-29456692)
chr8 (243-276)||(29456563-29456596)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 1980981 - 1981144
Alignment:
Q  113 gcaaaatcatatcactatagttcattccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatt 212  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  1980981 gcaaaaccatatcactatggttcattccgtttaaaatatgttgtgaaaaagaccatacaagataatttaaaataatataacatataaaactatttatatt 1981080  T
Q  213 tgttgtcaataaatctaataacatgtgaatattttaattagattaattaggggaccatagccta 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1981081 tgttgttaataaatctaataacatgtgaatattttaattagattaattaggggaccatagccta 1981144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 351 - 494
Target Start/End: Original strand, 1981465 - 1981608
Alignment:
Q  351 gggaccgtggtctctaaagcccccctccctccaccactaacaacatgtacttggaatgcattcccaaattggccaacttaactgggtgatgcttttgaaa 450  Q
    |||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1981465 gggaccatagtctctaaagcccccctccctccaccactaacaacaagtacttggaatgcattcccaaattggccaacttaactgggtgatgcttttgaaa 1981564  T
Q  451 gggaatctgaatctcatctatctatctatattgagagttgctat 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1981565 gggaatctgaatctcatctatctatctatattgagagttgctat 1981608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 39634640 - 39634767
Alignment:
Q  133 ttcattccgtttaaaatatgttgtggaaaag-accatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaat 231  Q
    |||||||| |||||||||||||||||||||| ||||||  |||| ||||||||| ||||||||||||||| || | ||||| ||||||||| ||||||||    
T  39634640 ttcattccatttaaaatatgttgtggaaaaggaccatatgagatgatttaaaataatataacatataaaactaattatattagttgtcaattaatctaat 39634739  T
Q  232 aacat-gtgaatattttaattagattaa 258  Q
     | || || || ||||||||||||||||    
T  39634740 catatggtaaacattttaattagattaa 39634767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 1980876 - 1980922
Alignment:
Q  7 tcacaagagaaatacattaaggactaaattatattttaatcccctat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1980876 tcacaagagaaatacattaaggactaaattatattttaatcccctat 1980922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 33906312 - 33906245
Alignment:
Q  194 atataaaattattgatatttgttgtcaataaatctaataacatg-tgaatattttaattagattaatt 260  Q
    |||||||| || ||||||| ||||||||| |||||||||| ||| |||| ||||||||||||||||||    
T  33906312 atataaaactaatgatattagttgtcaattaatctaataatatgatgaacattttaattagattaatt 33906245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 133 - 276
Target Start/End: Complemental strand, 1098073 - 1097929
Alignment:
Q  133 ttcattccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaata 232  Q
    |||||||| |||||||||||| ||||||| |||||||  |||||||||||||| ||||||||||||||| || ||||||| ||||||| | ||||||||     
T  1098073 ttcattccatttaaaatatgtcgtggaaaggaccatatgagataatttaaaataatataacatataaaactaatgatattagttgtcagttaatctaatg 1097974  T
Q  233 acat-gtgaatattttaattagattaattaggggaccatagccta 276  Q
    |||| ||||| |||||||||||||||||| | |||||||||||||    
T  1097973 acatagtgaacattttaattagattaattggaggaccatagccta 1097929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 1098186 - 1098149
Alignment:
Q  16 aaatacattaaggactaaattatattttaatcccctat 53  Q
    |||| |||||||||||||||||||||||||||||||||    
T  1098186 aaatccattaaggactaaattatattttaatcccctat 1098149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 38177860 - 38177921
Alignment:
Q  176 aatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaataacatg 237  Q
    |||||||||| ||||||  |||||||||| |||||||| ||| ||||||||||| |||||||    
T  38177860 aatttaaaataatataaagtataaaattaatgatatttattgacaataaatctagtaacatg 38177921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 134 - 260
Target Start/End: Complemental strand, 32491537 - 32491409
Alignment:
Q  134 tcattccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaataa 233  Q
    ||||||||||||||||||||| || ||| |||||||  |||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||||||    
T  32491537 tcattccgtttaaaatatgttatgtaaaggaccatatgagataatttaaaataatataacatataaaattaatgatattagttgtcaattaatctaataa 32491438  T
Q  234 cat-gtg-aatattttaattagattaatt 260  Q
    ||| ||| || ||||||||||||||||||    
T  32491437 catggtgaaacattttaattagattaatt 32491409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 37098273 - 37098406
Alignment:
Q  133 ttcattccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaata 232  Q
    |||||||| |||||||||| ||||||||| || ||||   || |||||||||| ||||||||||||||| || ||||||| |||||| || |||||||||    
T  37098273 ttcattccatttaaaatatattgtggaaaggagcatatgcgacaatttaaaataatataacatataaaactaatgatattagttgtctattaatctaata 37098372  T
Q  233 acat-gtgaatattttaattagattaattagggg 265  Q
    | || ||||| |||||||||||||||||||||||    
T  37098373 atatggtgaacattttaattagattaattagggg 37098406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 276
Target Start/End: Complemental strand, 15749576 - 15749444
Alignment:
Q  143 ttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaataacatg-tgaa 241  Q
    |||| |||||||| ||||| ||||||   || ||||| ||||| ||||||| || ||||||| ||||||| ||||||||| |||||||||||||| |||     
T  15749576 ttaacatatgttgcggaaaggaccatg--agttaattaaaaataatataacgtaaaaaattaatgatattagttgtcaattaatctaataacatgctgat 15749479  T
Q  242 tattttaattagattaattaggggaccatagccta 276  Q
     |||||||||||||||||| |||||||||| ||||    
T  15749478 cattttaattagattaattgggggaccataaccta 15749444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 32491651 - 32491614
Alignment:
Q  16 aaatacattaaggactaaattatattttaatcccctat 53  Q
    |||| |||||||||||||||||||||||||||||||||    
T  32491651 aaattcattaaggactaaattatattttaatcccctat 32491614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 37098173 - 37098210
Alignment:
Q  16 aaatacattaaggactaaattatattttaatcccctat 53  Q
    |||| |||||||||||||||||||||||||||||||||    
T  37098173 aaatccattaaggactaaattatattttaatcccctat 37098210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 19920450 - 19920486
Alignment:
Q  17 aatacattaaggactaaattatattttaatcccctat 53  Q
    ||||||||||||||||||||||||||  |||||||||    
T  19920450 aatacattaaggactaaattatatttgtatcccctat 19920486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 37225732 - 37225664
Alignment:
Q  167 atacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaataaca 235  Q
    |||||||||||||||||||  ||| |  ||||||| || ||||||| |||||||||  |||||||||||    
T  37225732 atacaagataatttaaaattgtattaagtataaaactaatgatattagttgtcaattgatctaataaca 37225664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 133 - 276
Target Start/End: Original strand, 4126140 - 4126285
Alignment:
Q  133 ttcattccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaata 232  Q
    |||||||  ||||||||||||| |||||| || ||||  |||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||||||    
T  4126140 ttcattcaatttaaaatatgttatggaaaggatcatatgagataatttaaaataatataacatataaaattaatgatattagttgtcaattaatctaata 4126239  T
Q  233 acat-gtgaatattttaattagattaattag-gggaccatagccta 276  Q
    | || ||||| ||||| |||||||||||| | ||||||||||||||    
T  4126240 atatggtgaacattttgattagattaattggagggaccatagccta 4126285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 132 - 276
Target Start/End: Complemental strand, 21908039 - 21907893
Alignment:
Q  132 gttcattccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaat 231  Q
    ||||||||| ||||||||||| || | |||  |||||   ||||||||||||||  ||||||||||||||  | ||||||| ||||||||| ||||||||    
T  21908039 gttcattccatttaaaatatgatgcgaaaagaaccatgtgagataatttaaaatactataacatataaaacaaatgatattagttgtcaattaatctaat 21907940  T
Q  232 aaca-tgtgaatattttaattagattaatt-aggggaccatagccta 276  Q
    |||| ||| || |||||||||||||||||| ||||||||||| ||||    
T  21907939 aacattgtaaacattttaattagattaattgaggggaccataaccta 21907893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 4126026 - 4126063
Alignment:
Q  16 aaatacattaaggactaaattatattttaatcccctat 53  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  4126026 aaattcattacggactaaattatattttaatcccctat 4126063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 21908152 - 21908115
Alignment:
Q  16 aaatacattaaggactaaattatattttaatcccctat 53  Q
    |||||||||||||||||||||||||  |||||||||||    
T  21908152 aaatacattaaggactaaattatatcctaatcccctat 21908115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 8874597 - 8874700
Alignment:
Q  133 ttcattccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaata 232  Q
    |||||||| |||||||||||||||||||| |||||||  |||||| ||||||| ||||||||||||| | || ||||||| ||||||||| |||||||||    
T  8874597 ttcattccatttaaaatatgttgtggaaatgaccatatgagataaattaaaataatataacatataagactaatgatattagttgtcaattaatctaata 8874696  T
Q  233 acat 236  Q
    ||||    
T  8874697 acat 8874700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 6276745 - 6276611
Alignment:
Q  133 ttcattccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaata 232  Q
    |||||||| |||||||||| ||||| ||| | |||||  | ||||||||||| ||||||||||| | || || ||||||| ||||||||| ||||||||     
T  6276745 ttcattccatttaaaatattttgtgaaaatggccatatgaaataatttaaaaggatataacatacataactaatgatattagttgtcaattaatctaatg 6276646  T
Q  233 acat-gtgaatattttaattagattaattagggga 266  Q
    |||| ||||| |||||||||||||||||| |||||    
T  6276645 acatggtgaacattttaattagattaattggggga 6276611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 136 - 276
Target Start/End: Complemental strand, 29952863 - 29952719
Alignment:
Q  136 attccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatga--tataacatataaaattattgatatttgttgtcaataaatctaataa 233  Q
    ||||| |||||||||||||| ||||| ||| ||   |||||||||||||| |  |||||||||| ||| || | ||| | ||||||||||||||||||||    
T  29952863 attccatttaaaatatgttgaggaaaggacaatgtgagataatttaaaataaaatataacatatcaaactaataatactagttgtcaataaatctaataa 29952764  T
Q  234 cat-gtgaatattttaattagattaatt-aggggaccatagccta 276  Q
     || |||||  ||||||||| || |||| ||||||| ||||||||    
T  29952763 tatggtgaacgttttaattaaatcaattgaggggactatagccta 29952719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 133 - 276
Target Start/End: Complemental strand, 6552945 - 6552800
Alignment:
Q  133 ttcattccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaata 232  Q
    |||||||| |||||||||||||||||||| |||||||  |||||||||||||| |||||| |||||||| || ||||||| ||||||||  |||||||||    
T  6552945 ttcattccatttaaaatatgttgtggaaaggaccatatgagataatttaaaataatataatatataaaactaatgatattagttgtcaaataatctaata 6552846  T
Q  233 acat-gtgaatattttaattagattaatt-aggggaccatagccta 276  Q
      || ||||| |||| ||||| ||||||| ||||| ||||| ||||    
T  6552845 ttatggtgaacatttgaattaaattaattgagggggccataaccta 6552800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 135 - 260
Target Start/End: Complemental strand, 30767672 - 30767546
Alignment:
Q  135 cattccgtttaaaatatgttgtggaaaagaccatacaagataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaataac 234  Q
    |||||| ||||||||||||||||||||  || |||  | |||| |||||||   ||||||||||||| || || |||| ||||||||| |||||||||||    
T  30767672 cattccatttaaaatatgttgtggaaagaactatatgaaataacttaaaatatcataacatataaaactaatgctattagttgtcaattaatctaataac 30767573  T
Q  235 at-gtgaatattttaattagattaatt 260  Q
    || || |||||||||||||||||||||    
T  30767572 atagtaaatattttaattagattaatt 30767546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 30767786 - 30767749
Alignment:
Q  16 aaatacattaaggactaaattatattttaatcccctat 53  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  30767786 aaatccattaaggactaaattacattttaatcccctat 30767749  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 45012408 - 45012325
Alignment:
Q  172 agataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaataacat-gtgaatattttaattaga 254  Q
    |||||||||||||| ||||||||||||||| || | ||||| ||||||||| ||||||||||||| || |||||||||||||||    
T  45012408 agataatttaaaataatataacatataaaactaataatattagttgtcaattaatctaataacatggtaaatattttaattaga 45012325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 45858175 - 45858239
Alignment:
Q  172 agataatttaaaatgatataacatataaaattattgatatttgttgtcaataaatctaataacat 236  Q
    |||||||||||||| ||||||  |||||||||| ||||||| | || |||| |||||| ||||||    
T  45858175 agataatttaaaataatataaagtataaaattaatgatattagctgccaattaatctagtaacat 45858239  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 45899857 - 45899893
Alignment:
Q  17 aatacattaaggactaaattatattttaatcccctat 53  Q
    |||||||||| |||||||||||||||| |||||||||    
T  45899857 aatacattaaagactaaattatatttttatcccctat 45899893  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 35958213 - 35958146
Alignment:
Q  194 atataaaattattgatatttgttgtcaataaatctaataacatg-tgaatattttaattagattaatt 260  Q
    |||||||| || ||||||| ||||||||| || ||||||| ||| |||| ||||||||||||||||||    
T  35958213 atataaaactaatgatattagttgtcaattaacctaataatatgatgaacattttaattagattaatt 35958146  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 29456692 - 29456626
Alignment:
Q  172 agataatttaaaatgatataacatataaaattattgatatttgttg-tcaataaatctaataacatg 237  Q
    |||||||||||||| ||||||  |||||||||||||||||| ||||  |||| |||||| |||||||    
T  29456692 agataatttaaaataatataaagtataaaattattgatattagttgcccaattaatctagtaacatg 29456626  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 276
Target Start/End: Complemental strand, 29456596 - 29456563
Alignment:
Q  243 attttaattagattaattaggggaccatagccta 276  Q
    |||||||||||||||||| |||||||||||||||    
T  29456596 attttaattagattaattgggggaccatagccta 29456563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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