View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_high_17 (Length: 459)
Name: NF4850_high_17
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 15 - 450
Target Start/End: Complemental strand, 43821371 - 43820936
Alignment:
| Q |
15 |
aatagcatatttaatcatcccttcaagttgttctaacaacacatgtagatcatattgtggaaacataacaatagattacccatttgccctccaaaacgga |
114 |
Q |
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| T |
43821371 |
aatagcatatttaatcatcccttcaagttgttctaacaacacatgtagatcatattgtggaaacataacaatagattacccatttgccctccaaaacgga |
43821272 |
T |
|
| Q |
115 |
tgtggccacccaggtttccgtgacctactcttttgcataaacaacgttctcatgttccacgtaacctcaggttcctatagagtcctacaaatagattacg |
214 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43821271 |
tgtggccacccaggtttccgtgacctactcttctgcataaacaacgttctcatgttccacgtaacctcaggttcctatagagtcctacaaatagattacg |
43821172 |
T |
|
| Q |
215 |
cataccaagctctcacacttcacgaaccacacatgtctacgtgcgaaacactagtcctaggaactaaaggcaacggtttcgcggtggaaccgtggcggtc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43821171 |
cataccaagctctcacacttcacgaaccacacatgtctacgtgcgaaacactagtcctaggaaataaaggcaacggtttcgcggtggaaccgtggcggtc |
43821072 |
T |
|
| Q |
315 |
cccatacatgaacccaacacctgacaacgttttcatgctcatttcttgttcacctcgttcacctttgttccaaggcttccctgataaacatttgccatgc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43821071 |
cccatacatgaacccaacacctgacaacgttttcatgctcatttcttgttcgcctcgttcacctttgttccaaggcttccctgataaacatttgccatgc |
43820972 |
T |
|
| Q |
415 |
agaaatgtttctggtatgggatgtgaagagtattat |
450 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
43820971 |
agaaatgtttctggtatgggatgtgaagagtattat |
43820936 |
T |
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