View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_high_20 (Length: 401)
Name: NF4850_high_20
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 6452050 - 6452233
Alignment:
| Q |
10 |
aagaatatatgacacatacatgcattaccaaatcattattttgatagagtttgagaagaaatatttaaggcttt-gttccatcaaagaccaaattgttca |
108 |
Q |
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| T |
6452050 |
aagaatatatgacacatacatgcattaccaaatcattattgtgatagagtttgagaagaaatatttaaggcttttgttccatcaaagaccaaattgttca |
6452149 |
T |
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| Q |
109 |
ttttgaaatgatattacacctttgtcaaacactaaaaaaccgatttttgactgaaaacttatacttatgaattaagttgatctg |
192 |
Q |
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| T |
6452150 |
ttttgaaatgatattacacctttgtcaaacactaaaaaaccgatttttgaccgaaaacttatacttatgaactaagttgatctg |
6452233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 258 - 401
Target Start/End: Original strand, 6452301 - 6452444
Alignment:
| Q |
258 |
gatcacattgaatcttcactagaatctttatatttttgcatgtaaattaactacctccgcgtgcaactttaaaacactaattcttgaagtctttgccaaa |
357 |
Q |
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| T |
6452301 |
gatcacattgaatcttcactcgaatctttatatttttgcatgtaaattgactacctccgcatgcaactttaaaacactaattcttcaagtctttgccaaa |
6452400 |
T |
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| Q |
358 |
cctaaatggaggcaacaattttctaaaagcttgaaccttgatga |
401 |
Q |
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| T |
6452401 |
cctaaatggaggaaacaattttctaaaagcttgaaccttgatga |
6452444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 6451790 - 6451881
Alignment:
| Q |
13 |
aatatatgacacatacatgcattaccaaatcattattttgatagagtttgagaagaaatatttaagg-ctttgttccatcaaagaccaaatt |
103 |
Q |
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| T |
6451790 |
aatatatgacacatatatgtattaccaaatcattgttttgatagagtataagaagaaatatttaaggatttttttccatcaaggaccaaatt |
6451881 |
T |
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