View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_high_22 (Length: 386)
Name: NF4850_high_22
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 43 - 369
Target Start/End: Complemental strand, 9619969 - 9619648
Alignment:
| Q |
43 |
agttcaaagagaattgttcaggttcagcctcacatcaacttgcgtctcgggctgcccagtttgatttgcaagatgtgaaaagattcataagtgtttcatc |
142 |
Q |
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| T |
9619969 |
agttcagagagaattgttcaggttcaacctcacatcaacttacgtttcgggctacccagtttgcattgcaagatgtggaaaaattcagaagtgtttcatc |
9619870 |
T |
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| Q |
143 |
ttatcgcagctccagtcacgtgctaagagccgcgcgtcacgagaaactgttactgaaggaagtgctaatagaaatgttttcaattatttgagttattcgg |
242 |
Q |
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| T |
9619869 |
ttatcgcaactccattcacgtgctaagagccatacgtcgcgagaaactgttacagaaggaagtgctaatagaaatgttttcaattatttgagttattagg |
9619770 |
T |
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| Q |
243 |
cttttttaactgacccaaattgaatattgggttttttagaaaattaagtcaaacaatgcctatatataaataaggcaagcaacacaagaagcatccgtca |
342 |
Q |
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| T |
9619769 |
cttttttagctgacccaaattgaatatttggtttttcataaaattaagttaaacaatgcctatatataaaaaaggcaagcaacac-----gcatccgtca |
9619675 |
T |
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| Q |
343 |
aaagagagaataaactgagacacaaag |
369 |
Q |
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| T |
9619674 |
aaagagagaatacattgaaacacaaag |
9619648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 16649135 - 16649073
Alignment:
| Q |
177 |
cgtcacgagaaactgttactgaaggaagtgctaatagaaatgttttcaattatttgagttatt |
239 |
Q |
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| T |
16649135 |
cgtcacgagagtctgttattgaagggagtgcaaatagaaatgttttcagttattagggttatt |
16649073 |
T |
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