View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4850_high_23 (Length: 372)
Name: NF4850_high_23
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 7128633 - 7128276
Alignment:
| Q |
1 |
aatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttcctctcgccatcagaaccattggaagcttaatgtattccatgcaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7128633 |
aatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatgtattccatgcaga |
7128534 |
T |
|
| Q |
101 |
aggaggattggtcaacattcaagaacaaagatcttatgaagattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7128533 |
aggaggattggtcaacattcaagaacatagatcttatgaaaattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatct |
7128434 |
T |
|
| Q |
201 |
accatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcacaaggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
7128433 |
accatttcatttgaaaaagtgctttgctttttgttcattgttcccaaaagactatttaattcctaaaacaacattgattcgagtttggattgcacaaggg |
7128334 |
T |
|
| Q |
301 |
tttattca---atcgacagatgaaagtacaagtttagaagatattggtgataagtact |
355 |
Q |
| |
|
||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7128333 |
tttgttcagtcatcatcagatgaaagtacaagtttagaagatattggtgataagtact |
7128276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 7721907 - 7721554
Alignment:
| Q |
1 |
aatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttcctctcgccatcagaaccattggaagcttaatgtattccatgcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||| || |
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|
| T |
7721907 |
aatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttccgctcgccattagaagcattggaagcttgatgtattccatgccga |
7721808 |
T |
|
| Q |
101 |
aggaggattggtcaacattcaagaacaaagatcttatgaagattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatct |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7721807 |
agaaggattggtcaacattcaagaacaaagatcttatgaaaattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatct |
7721708 |
T |
|
| Q |
201 |
accatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcacaaggg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
7721707 |
accatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttaattcc-aaaacaacattgattcgactttggattgcacaaggg |
7721609 |
T |
|
| Q |
301 |
tttattcaatcgacagatgaaagtacaagtttagaagatattggtgataagtact |
355 |
Q |
| |
|
||| |||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7721608 |
tttgttcagtcatcagatgaaagtacaagtttagaagatattggtgataagtact |
7721554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 7520574 - 7520928
Alignment:
| Q |
1 |
aatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttcctctcgccatcagaaccattggaagcttaatgtattccatgcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
7520574 |
aatgaggaattggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatgtattccatgcaga |
7520673 |
T |
|
| Q |
101 |
aggaggattggtcaacattcaagaacaaagatcttatgaagattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7520674 |
aggaggattggtcaacattcaagaacaaagatcttatgcaaattgatgaacaaggtg---ataaaattttacagcttatcaaactaagttatgatcatct |
7520770 |
T |
|
| Q |
201 |
accatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcacaaggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7520771 |
accatttcatttgaaaaagtgctttgctttttgttcattgtttccaaaagactatttcattcataaaacaacattgattcgactttggattgcacaaggg |
7520870 |
T |
|
| Q |
301 |
tttattca---atcgacagatgaaagtacaagtttagaagatattggtgataagtact |
355 |
Q |
| |
|
||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7520871 |
tttgttcagtcatcatcagatgaaagtacaagtttagaagatattggtgataagtact |
7520928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 7494907 - 7495258
Alignment:
| Q |
1 |
aatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttcctctcgccatcagaaccattggaagcttaatgtattccatgcaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7494907 |
aatgaggaattggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatgtattccatgcaga |
7495006 |
T |
|
| Q |
101 |
aggaggattggtcaacattcaagaacaaagatcttatgaagattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatct |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7495007 |
aggaggattggtcatcattcaagaacaaagatcttatgcaaattgatgaacaaggtgataa---aattttacagcttatcaaactaagttatgatcatct |
7495103 |
T |
|
| Q |
201 |
accatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcacaaggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| |
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|
| T |
7495104 |
accatttcatttgaaaaagtgctttgctttttgttcattgtttccaaaagactatttaattgataaaacaaaattgattcgactttggattgcacaaggg |
7495203 |
T |
|
| Q |
301 |
tttattcaatcgacagatgaaagtacaagtttagaagatattggtgataagtact |
355 |
Q |
| |
|
||| |||| || | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7495204 |
tttgttcagtcatctgatgaaagtacaagtttagaagatattggtgataagtact |
7495258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 7528624 - 7528978
Alignment:
| Q |
1 |
aatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttcctctcgccatcagaaccattggaagcttaatgtattccatgcaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||||| || | ||| |
|
|
| T |
7528624 |
aatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgtgcgggtgttcctctcgccatcagaagcattggaagcttaatgtatttcaaggaga |
7528723 |
T |
|
| Q |
101 |
aggaggattggtcaacattcaagaacaaagatcttatgaagattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7528724 |
aggaggattggtcaacattcaagaacaaagatcttatgcaaattgatgaacaaggtgataa---aattttacagcttatcaaactaagttatgatcatct |
7528820 |
T |
|
| Q |
201 |
accatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcacaaggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7528821 |
accatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcacaaggg |
7528920 |
T |
|
| Q |
301 |
tttattcaatcgaca---gatgaaagtacaagtttagaagatattggtgataagtact |
355 |
Q |
| |
|
||| |||| || || |||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
7528921 |
tttgttcagtcatcagatgatgaaagtacaagtttagaagatattggtcatatgtact |
7528978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 7482505 - 7482862
Alignment:
| Q |
1 |
aatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttcctctcgccatcagaaccattggaagcttaatgtattccatgcaga |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||||||| | || |||||||||||||| |||| ||||||||||||||| |||||||||| || |
|
|
| T |
7482505 |
aatgaggaatttgtgtcagttggcaaggaaattgtgaaaaaatgtgcgggtgttcctctcgccattagaagcattggaagcttaatctattccatgcgga |
7482604 |
T |
|
| Q |
101 |
aggaggattggtcaacattcaagaacaaagatcttatgaagattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7482605 |
aggaggattggtcaacattcaagaacaaagatcttatgaaaattgatgaacaaggtgataataaaatttttcagcttatcaaactaagttatgatcatct |
7482704 |
T |
|
| Q |
201 |
accatttcatttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcacaaggg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
7482705 |
accatttcatttgaaaaagtgctttgctttttgttcattgtttccaaaagactttttaatttgtaaaataacattgattcgactttggattgcacaaggg |
7482804 |
T |
|
| Q |
301 |
tttattca---atcgacagatgaaagtacaagtttagaagatattggtgataagtact |
355 |
Q |
| |
|
||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7482805 |
tttgttcagtcatcatcagatgaaagtacaagtttagaagatattggtgataagtact |
7482862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 16749903 - 16749557
Alignment:
| Q |
12 |
ggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttcctctcgc-catcagaaccattggaagcttaatgtattccatgcaga---aggagga |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||| || ||| | || |||||||| ||||||| ||| ||| | | || |||| |
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|
| T |
16749903 |
ggtgtcaattggcaaggaaatttcaaaaaaatgttcaggggtacctcttgctcataa-aagtattggaagtttaatgttttctatggaaactgagaagga |
16749805 |
T |
|
| Q |
108 |
ttggtcaacattcaagaacaaagatcttatgaagattgatgaacaaggtgataataaaattttacagcttatcaaactaagttatgatcatctaccattt |
207 |
Q |
| |
|
||||| | |||||||||||||||||||| || |||||||| || |||| ||||||||||| || ||||||||||||||||||||||||||||| ||| |
|
|
| T |
16749804 |
ttggttgaacttcaagaacaaagatcttatcaaaattgatgagcagggtggcaataaaatttttcaacttatcaaactaagttatgatcatctacccttt |
16749705 |
T |
|
| Q |
208 |
catttgaaaaagtgctttgctttttgttctttgtttccaaaagactatttcattccaaaaacaacattgattcgactttggattgcacaagggtttattc |
307 |
Q |
| |
|
|| |||||||||||||||| ||||| ||||||||||||||||||||| ||| || | || |||||||||||||||||||||||||| | ||| |
|
|
| T |
16749704 |
tatctgaaaaagtgctttgcattttgctctttgtttccaaaagactatcgaattgagaagaaaaagttgattcgactttggattgcacaaggtctcgttc |
16749605 |
T |
|
| Q |
308 |
aatcgacagatgaaagtacaagtttagaagatattggtgataagtact |
355 |
Q |
| |
|
| || | ||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
16749604 |
attcatccgatgaaagtacaaatttagaagataatggtgataagtact |
16749557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 32727274 - 32727237
Alignment:
| Q |
19 |
attggcaaggaaattgtgaaaaaatgttcaggggttcc |
56 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
32727274 |
attggcaaagaaattgtgaaaaaatgtgcaggggttcc |
32727237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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