View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4850_high_26 (Length: 348)
Name: NF4850_high_26
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_26 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 26990494 - 26990823
Alignment:
| Q |
1 |
gctaagacagatcaactacaaattcttcgatgtatgtcagataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtgggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26990494 |
gctaagacagatcaactacaaattcttcgatgtatgtcagataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtgggga |
26990593 |
T |
|
| Q |
101 |
tttgtaggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagttagttatcttgttagtcatctttcttctggttcgtgcatttttctgatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
26990594 |
tttgtaggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagttagttatcttgttattcatctttcttctggttcgtgcattttgctgatg |
26990693 |
T |
|
| Q |
201 |
gaaatataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaattaattcttgttttccaggttttgtcatcatttcaagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
26990694 |
gaaatataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaatcaattcttgttttccaggttttgtcatcatttcgagg |
26990793 |
T |
|
| Q |
301 |
tgaagtcttaagaggatgtgtgatcatttt |
330 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
26990794 |
tgaagtcttaagaggatgtgtgatcgtttt |
26990823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 27074438 - 27074109
Alignment:
| Q |
1 |
gctaagacagatcaactacaaattcttcgatgtatgtcagataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtgggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27074438 |
gctaagacagatcaactacaaattcttcgatgtatgtctgataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtgggga |
27074339 |
T |
|
| Q |
101 |
tttgtaggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagttagttatcttgttagtcatctttcttctggttcgtgcatttttctgatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |||||| |
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|
| T |
27074338 |
tttgtaggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagttagttatctttttattcatctttcttctggtttgtgcattttgctgatg |
27074239 |
T |
|
| Q |
201 |
gaaatataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaattaattcttgttttccaggttttgtcatcatttcaagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
27074238 |
gaaatataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaatcaattcttgttttccaggttttgtcatcatttcaagg |
27074139 |
T |
|
| Q |
301 |
tgaagtcttaagaggatgtgtgatcatttt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
27074138 |
tgaagtcttaagaggatgtgtgatcatttt |
27074109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 27029376 - 27029703
Alignment:
| Q |
1 |
gctaagacagatcaactacaaattcttcgatgtatgtcagataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtgggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
27029376 |
gctaagacagatcaactacaaattcttcgatgtatgtcagataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgtagtgggaa |
27029475 |
T |
|
| Q |
101 |
tttgtaggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagttagttatcttgttagtcatctttcttctggttcgtgcatttttctgatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
27029476 |
tttgtaggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagttagttatcttgttattcatctttcttctggttcgtgcattttgttgatg |
27029575 |
T |
|
| Q |
201 |
gaa----atataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaattaattcttgttttccaggttttgtcatcatttc |
296 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
27029576 |
aaaatatatataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaatcaattcttgttttccaggttttgtcatcatttc |
27029675 |
T |
|
| Q |
297 |
aaggtgaagtcttaagaggatgtgtgat |
324 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27029676 |
gaggtgaagtcttaagaggatgtgtgat |
27029703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 5 - 319
Target Start/End: Original strand, 21434665 - 21434990
Alignment:
| Q |
5 |
agacagatcaactacaaattcttcgatgtatgtcagataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtggggatttg |
104 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||| |||| |||||||| |||||||||||||| || ||||||||||||| | |||||| |||| |
|
|
| T |
21434665 |
agacatatcaactccaaattcttcgatgtatgtctcatatgttgctgataaaatgtttgttgtatttgacatattgctaaaactgtatggtggggttttg |
21434764 |
T |
|
| Q |
105 |
taggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagttagttatc---ttgttagtcatctttcttctggttcgtgca--------tttt |
193 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || | ||||||||||| ||||||||| |||| |
|
|
| T |
21434765 |
taggaacttcaaggagatcttgtcgatcgagatgtgaggcaggtagttagttatcgttttgatatttatctttcttctagttcgtgcattttgtattttt |
21434864 |
T |
|
| Q |
194 |
tctgatggaaatataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaattaattcttgttttccaggttttgtcatcat |
293 |
Q |
| |
|
||| |||||||| |||||| ||||||||||||| | |||||||||||||||||||| || ||| |||| ||||| || ||||||||||||||||||| |
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|
| T |
21434865 |
gttgacggaaatatcagttaacttgtcatcctagtttgatattctgataatgttatgtcattctttcaatcaattcatgatttccaggttttgtcatcac |
21434964 |
T |
|
| Q |
294 |
ttcaaggtgaagtcttaagaggatgt |
319 |
Q |
| |
|
||| |||||||||| |||| |||||| |
|
|
| T |
21434965 |
ttcgaggtgaagtcctaagcggatgt |
21434990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 27153415 - 27153747
Alignment:
| Q |
1 |
gctaagacagatcaactacaaattcttcgatgtatgtcagataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtgggga |
100 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || ||| || | ||||||||| | ||||||||||||||| ||||||||||||||| ||||| | |
|
|
| T |
27153415 |
gctaagactgatcaact-caaattcttcgatgtatatctcatacgtcgctgataaaaagtctgttgtatttgatatattgctaaaactgtgtggtgggaa |
27153513 |
T |
|
| Q |
101 |
tttgtaggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagttagttatcttgt---tagtcatctttcttctggttcgtgcatttttctg |
197 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||| ||| |||||||| ||| |||||||||||| |||| ||||||||||| |||| |||||||| | |
|
|
| T |
27153514 |
tttgttggaacttcaaggagaccttgtcgatcaagacatgaggcagatagctagttatcttgttgatagttatctttcttctagttcatgcattttgata |
27153613 |
T |
|
| Q |
198 |
a-tggaaatataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaattaattcttgttttccaggttttgtcatcatttc |
296 |
Q |
| |
|
| | ||||||||||||||||||| ||||||||| ||||| ||||| ||||| | | |||||||| ||||| ||||||||| |||||||||||| ||| |
|
|
| T |
27153614 |
attagaaatataagttaatttgtgatcctagtgagatatttcgataacgttatatcactcttgcaatcaattcatgttttccatgttttgtcatcacttc |
27153713 |
T |
|
| Q |
297 |
aaggtgaagtcttaagaggatgtgtgatcatttt |
330 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||| |
|
|
| T |
27153714 |
gaggtgaagtcctaagcggatgtgtgatcgtttt |
27153747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 34692751 - 34693080
Alignment:
| Q |
1 |
gctaagacagatcaactacaaattcttcgatgtatgtcagataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtgggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34692751 |
gctaagacagatcaactacaaattcttcgatgtatgtcagataagttgttgataaaaaatttgttgtatttgatatgttgctaaaactgtgttgtgggga |
34692850 |
T |
|
| Q |
101 |
tttgtaggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagttagttatcttgttagtcatctttcttctggttcgtgcatttttctgatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
34692851 |
tttgtaggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagttagttatctttttattcatctttcttctggttcgtgcattttgctgatg |
34692950 |
T |
|
| Q |
201 |
gaaatataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaattaattcttgttttccaggttttgtcatcatttcaagg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
34692951 |
gaaatataagttaatttgtcatcctagtgtcatattctgataatgttatgttatgcttgcaatcaattcttgttttccaggttttgtcatcatttcgagg |
34693050 |
T |
|
| Q |
301 |
tgaagtcttaagaggatgtgtgatcatttt |
330 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
|
|
| T |
34693051 |
tgaagtcttaagaggatgtgtgatcgtttt |
34693080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 50172059 - 50172008
Alignment:
| Q |
102 |
ttgtaggaacttcaaggagatcttgttgatcgagatgtgaggcaggtagtta |
153 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50172059 |
ttgtagaaacttcaaggagatcttgttgatcgagatgtgaggcaggtagtta |
50172008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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