View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4850_high_39 (Length: 285)
Name: NF4850_high_39
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_39 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 45305268 - 45305528
Alignment:
| Q |
19 |
actggtcttggaatgagaggccttagtttccttccactgaatggataatcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305268 |
actggtcttggaatgagaggccttagtttccttccactgaatggataatcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgt |
45305367 |
T |
|
| Q |
119 |
caactagggcttttctcactaaaaggctaattattataaatagtagaaggaatgaagttacttagctagctataaacactgtgttaaaaaacacatataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45305368 |
caactagggcttttctcactaaaaggctaattattataaatagtagaaggaatgaagttacttagctagctataaacactgtgttaaaaaacacatataa |
45305467 |
T |
|
| Q |
219 |
taaatgaaggggattgaaatggaaaagtgggagtagttgttagatatggaaatattcttgg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
45305468 |
taaatgaaggggattgaaatggaaaagtgggagtagttgttagatatagaaatatttttgg |
45305528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 40005312 - 40005490
Alignment:
| Q |
19 |
actggtcttggaatgagaggccttagtttccttccactgaatggataatcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgt |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40005312 |
actggtcttgacatgagaggccttagtttccttccacataatggataatcagccatgttgaactcaccaccttcactgtaacccaccatccacatgttgt |
40005411 |
T |
|
| Q |
119 |
caactagggcttttctcactaaaaggctaattattataaatagtagaaggaatgaagttacttagctagctataaacactgtgtta |
204 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
40005412 |
caactaggccttttctcactaaaaggcta---attataaatagtagaacgaatgaagttact----tagctataaacactgtgtta |
40005490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 40220240 - 40220062
Alignment:
| Q |
19 |
actggtcttggaatgagaggccttagtttccttccactgaatggataatcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgt |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40220240 |
actggtcttggcatgagaggccttagtttccttccacagaatggataatcagccatgttgaactcaccaccttcattgtaacccaccatccacatgttgt |
40220141 |
T |
|
| Q |
119 |
caactagggcttttctcactaaaaggctaattattataaatagtagaaggaatgaagttacttagctagctataaacactgtgtta |
204 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
40220140 |
caactaggccttttctcactaaaaggctaa---ttataaatagtagaacgaatgaagttact----tagctataaacactgtgtta |
40220062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University