View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4850_high_45 (Length: 267)
Name: NF4850_high_45
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 4 - 255
Target Start/End: Original strand, 27255699 - 27255950
Alignment:
| Q |
4 |
agagcataaagacctaatcatatactataggattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatgtcatgctctata |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27255699 |
agagcataaagacctaatcatatactataggattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatttcatgctctata |
27255798 |
T |
|
| Q |
104 |
tttgtgttaagagggttataatcgtattcgcatgtataatgcaaaaatgaaaaacatgaggatagacaaaagttaataataaggaagagaaagtaaaatt |
203 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27255799 |
tttgcgttaagagggttataatcgtattcgcatgtataatgcaaaaatgaaaaacatgaggatagacaaaagttaataataaggaagagaaagtaaaatt |
27255898 |
T |
|
| Q |
204 |
cataccactaaaaatcaaagcttcgcgtgtaaccgaaagtgaaacaatattg |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27255899 |
cataccactaaaaatcaaagcttcgcgtgtaaccgaaagtgaaacaatattg |
27255950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 21199686 - 21199930
Alignment:
| Q |
11 |
aaagacctaatcatatactataggattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatgtcatgctctatatttgtgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
21199686 |
aaagacctaatcatatactataggattctatcattctaaaatcacttcataaacaatgattttacaattatagacaacatttcatgctctatatttgcgt |
21199785 |
T |
|
| Q |
111 |
taagagggttataatcgtattcgcatgtataatgcaaaaatgaaaaacatgaggatagacaaaagttaataataaggaagagaaagtaaaattcatacca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21199786 |
taagagggttataatcgtattcgcatgtataatgcaaaaatgaaaaaaatgaggatagacaaaagttaataataaggaggagaaagtaaaattcatacca |
21199885 |
T |
|
| Q |
211 |
ctaaaaatcaaagcttcgcgtgtaaccgaaagtgaaacaatattg |
255 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21199886 |
ctaaaaatcaaagcttcgcatgtaaccgaaagtgaaacaatattg |
21199930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University