View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4850_high_49 (Length: 255)
Name: NF4850_high_49
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 24066508 - 24066276
Alignment:
| Q |
5 |
ggtagataatactaggctttcgacccgtgcaatgcattatatgcactatatgtaagtacctctgtaagcttacctgattcaaagttgaattaaattgatc |
104 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
24066508 |
ggtagataacactaggctttcgacccgtgcgatgcattatatgcactatatgtaagtacctctgtaagcttacctgattcaaagttaaattaaatggacc |
24066409 |
T |
|
| Q |
105 |
taggttcaaatctcaataccgatagcaggacctgattggtagatagtatgtaagtatctctataagcactatatgaaactcgagactttcccttaccttg |
204 |
Q |
| |
|
||||||||||| || | ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24066408 |
taggttcaaatttcgacaccgatagcaggatctaattggtagatagtatgtaagtatctctataagcactatatgaaactcgagactttcccttaccttg |
24066309 |
T |
|
| Q |
205 |
attgagacccaactcacataatttattatctat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24066308 |
attgagacccaactcacataatttattatctat |
24066276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 24066260 - 24066054
Alignment:
| Q |
31 |
gtgcaatgcattatatgcactatatgtaagtacctctgtaagcttacctgattcaaagttgaattaaattgatctaggttcaaatctcaataccgatagc |
130 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||| | ||||||||| |
|
|
| T |
24066260 |
gtgcgatgcattatatgcactatatgtaagtacctctgtaagcttacctaattcaaagttgaattaaatagacctaggttcaaatctcgaaaccgatagc |
24066161 |
T |
|
| Q |
131 |
aggacctgattggtagatagtatgtaagtatctctataagcactatatgaaactcgagactttcccttaccttgattgagacccaactcacataatttat |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24066160 |
aggacctgattggtagatagtatgtaagtatctctataagcactatatgaaactcgagactttcccttaccttgattgagacccaactcacataatttat |
24066061 |
T |
|
| Q |
231 |
tatctat |
237 |
Q |
| |
|
||||||| |
|
|
| T |
24066060 |
tatctat |
24066054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University