View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_high_5 (Length: 608)
Name: NF4850_high_5
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 151 - 592
Target Start/End: Complemental strand, 3594247 - 3593806
Alignment:
| Q |
151 |
atctcattggatttcagggatagaaataaatatgtcaaaggagatcgccgctttgaacgtgcctactgtagtcgtaatcccagagaaatgggaaaaacat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594247 |
atctcattggatttcagggatagaaataaatatgtcaaaggagatcgccgctttgaacgtgcctactgtagtcgtaatcccagagaaatgggaaaaacat |
3594148 |
T |
|
| Q |
251 |
gggcagaaaaggaactcaagaatctttataggtttgcatatgctattttttcattctttcatatttttcgaatatacaagggttcaattactcattttgc |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3594147 |
gggcagaaaaggaactcaagaatctttataggtttgcatatgctattttttcattctttcatatttttccaatatacaagggttcaattactcattttgc |
3594048 |
T |
|
| Q |
351 |
ctaagcttttctatatccgagtgcaggatagctgcaaaaggaattaggtgccctttaccgcgtcatcaaaagctacatatggtggtgatggattttattg |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594047 |
ctaagcttttctatatccgagtgcaggatagctgcaaaaggaattaggtgccctaaaccgcgtcatcaaaagctacatatggtggtgatggattttattg |
3593948 |
T |
|
| Q |
451 |
gtactgcttttattcttcattttgatacaatctgattgtcccaattctaatcaaaatgctctcagttgtgtttgttacattgaacaccaccggtgctata |
550 |
Q |
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| T |
3593947 |
gtactgcttttattcttcattttgatacaatctgattgtcccaattctaatcaaaatgctctcagttgtgtttgttacattgaacaccaccggtgctata |
3593848 |
T |
|
| Q |
551 |
tgtcttcatttcattgaaaaaataaataaagatggaaagtta |
592 |
Q |
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| T |
3593847 |
tgtcttcatttcattaaaaaaagaaataaagatggaaagtta |
3593806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 3594386 - 3594274
Alignment:
| Q |
10 |
aagaaaatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtaccttgcttgcgtaattcattgttctaacttctcaacgctgaaagtta |
109 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |
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| T |
3594386 |
aagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtacc----ttgcgtaattgatcgttctaacttctcaacgctgaaagtta |
3594291 |
T |
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| Q |
110 |
cacaggctactattatc |
126 |
Q |
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||||||||||||||||| |
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| T |
3594290 |
cacaggctactattatc |
3594274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 424 - 539
Target Start/End: Original strand, 35715300 - 35715413
Alignment:
| Q |
424 |
tacatatggtggtgatggattttattggtactgcttttattcttcattttgatacaatctgattgtcccaattctaatcaaaatgctctcagttgtgttt |
523 |
Q |
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||||||| |||| ||||| |||||||||||||||||||| || |||||||||||||||||||| | |||||| ||||| || | |||||| || ||||| |
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| T |
35715300 |
tacatatcctggttatggaatttattggtactgcttttatcctgcattttgatacaatctgattct-ccaattataatc-aatttctctcaattctgttt |
35715397 |
T |
|
| Q |
524 |
gttacattgaacacca |
539 |
Q |
| |
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|||| |||||| |||| |
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| T |
35715398 |
gttatattgaatacca |
35715413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 164 - 306
Target Start/End: Complemental strand, 28934014 - 28933872
Alignment:
| Q |
164 |
tcagggatagaaataaatatgtcaaaggagatcgccgctttgaacgtgcctactgtagtcgtaatcccagagaaatgggaaaaacatgggcagaaaagga |
263 |
Q |
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||||||||||| || |||||| |||||||||||||| |||||| | |||||| | ||||||| || |||||| ||||||||||||||||||||| |
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| T |
28934014 |
tcagggatagagctagatatgtgaaaggagatcgccggtttgaaaacgagtactgtgggtctaatccccgaaaaatggtaaaaacatgggcagaaaagga |
28933915 |
T |
|
| Q |
264 |
actcaagaatctttataggtttgcatatgctattttttcattc |
306 |
Q |
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| | ||||||| |||||||||| |||| ||||||||||| |
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| T |
28933914 |
aaggagtaatctttcgaggtttgcatttgctcttttttcattc |
28933872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 35714620 - 35714666
Alignment:
| Q |
17 |
tgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac |
63 |
Q |
| |
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||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
35714620 |
tgcaattaaaatatacaaaacatctgttctggtatttaagtaagtac |
35714666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 35714861 - 35714940
Alignment:
| Q |
225 |
taatcccagagaaatgggaaaaacatgggcagaaaaggaactcaagaatctttataggtttgcatatgctattttttcat |
304 |
Q |
| |
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||||||| || |||||| ||||||||||||||||||||| ||| ||||||| | |||||||||| |||| || |||||| |
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| T |
35714861 |
taatccccgaaaaatggttaaaacatgggcagaaaaggaattcaggaatcttaagaggtttgcatttgctcttatttcat |
35714940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 490 - 532
Target Start/End: Complemental strand, 3589145 - 3589103
Alignment:
| Q |
490 |
cccaattctaatcaaaatgctctcagttgtgtttgttacattg |
532 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
3589145 |
cccaattctaatcaaaatgctctcagttgtgtttcttatattg |
3589103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 28934199 - 28934153
Alignment:
| Q |
17 |
tgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac |
63 |
Q |
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||||||||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
28934199 |
tgcaattaaaatatacaaaacatctgttctggcatttaagtgagtac |
28934153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 438 - 491
Target Start/End: Complemental strand, 28933488 - 28933435
Alignment:
| Q |
438 |
atggattttattggtactgcttttattcttcattttgatacaatctgattgtcc |
491 |
Q |
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||||| |||||||||| ||||||||| || ||||||||||||||||||||||| |
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| T |
28933488 |
atggaatttattggtattgcttttatcctggattttgatacaatctgattgtcc |
28933435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 8490730 - 8490618
Alignment:
| Q |
10 |
aagaaaatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtaccttgcttgcgtaattcattgttctaacttctcaacgctgaaagtta |
109 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||||| |
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| T |
8490730 |
aagaatatgcaattaaaataaacaaaacatctgttctgggatttaagtaagtacc----ttgcgtatttgattgttctaacttctgaacgctgaaagtta |
8490635 |
T |
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| Q |
110 |
cacaggctactattatc |
126 |
Q |
| |
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|||||| |||||||||| |
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| T |
8490634 |
cacaggatactattatc |
8490618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 8490590 - 8490531
Alignment:
| Q |
151 |
atctcattggatttcagggatagaaataaatatgtcaaaggagatcgccgctttgaacgtg |
211 |
Q |
| |
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||||||||| || ||||||||||||| |||||||||||||||||| ||| ||||||||||| |
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| T |
8490590 |
atctcattg-atatcagggatagaaaaaaatatgtcaaaggagattgccactttgaacgtg |
8490531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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