View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4850_high_56 (Length: 240)

Name: NF4850_high_56
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4850_high_56
NF4850_high_56
[»] chr4 (11 HSPs)
chr4 (1-221)||(4963358-4963585)
chr4 (160-213)||(26331900-26331954)
chr4 (160-213)||(38340334-38340387)
chr4 (160-209)||(10399246-10399296)
chr4 (160-221)||(35021472-35021534)
chr4 (164-221)||(21729140-21729197)
chr4 (164-213)||(41536920-41536969)
chr4 (166-211)||(56298140-56298185)
chr4 (173-213)||(42773059-42773099)
chr4 (160-212)||(43722759-43722811)
chr4 (160-212)||(56564998-56565050)
[»] chr1 (10 HSPs)
chr1 (161-213)||(51046137-51046189)
chr1 (160-210)||(43840342-43840392)
chr1 (166-221)||(11410627-11410683)
chr1 (160-210)||(44365965-44366015)
chr1 (160-213)||(9527991-9528044)
chr1 (157-217)||(14907045-14907106)
chr1 (160-205)||(41032925-41032970)
chr1 (160-212)||(1454515-1454567)
chr1 (160-212)||(25165107-25165159)
chr1 (164-212)||(45701326-45701374)
[»] chr6 (4 HSPs)
chr6 (160-212)||(9665304-9665356)
chr6 (160-213)||(12329270-12329323)
chr6 (159-212)||(13496109-13496162)
chr6 (164-205)||(14350947-14350988)
[»] chr8 (4 HSPs)
chr8 (160-221)||(39433404-39433466)
chr8 (172-220)||(3456828-3456876)
chr8 (164-206)||(1764975-1765017)
chr8 (156-217)||(7380034-7380095)
[»] chr3 (12 HSPs)
chr3 (163-212)||(46337245-46337294)
chr3 (160-212)||(7827502-7827554)
chr3 (160-212)||(7829890-7829942)
chr3 (164-213)||(29791774-29791823)
chr3 (160-193)||(36170124-36170157)
chr3 (164-213)||(49088750-49088799)
chr3 (160-213)||(53162192-53162245)
chr3 (160-212)||(6835161-6835213)
chr3 (160-212)||(7824801-7824853)
chr3 (160-212)||(28244119-28244171)
chr3 (160-212)||(43345022-43345074)
chr3 (172-212)||(48418375-48418415)
[»] chr2 (9 HSPs)
chr2 (160-213)||(44026602-44026655)
chr2 (163-205)||(7121782-7121824)
chr2 (161-211)||(14776608-14776658)
chr2 (163-212)||(35327353-35327402)
chr2 (157-193)||(6723111-6723147)
chr2 (160-212)||(23718929-23718981)
chr2 (160-212)||(24106601-24106653)
chr2 (160-212)||(24548111-24548163)
chr2 (154-186)||(34388622-34388654)
[»] chr5 (6 HSPs)
chr5 (160-212)||(24498578-24498630)
chr5 (167-213)||(25385053-25385099)
chr5 (160-220)||(32559298-32559359)
chr5 (160-213)||(41266380-41266433)
chr5 (161-213)||(16193102-16193154)
chr5 (160-200)||(25928908-25928948)
[»] scaffold0062 (1 HSPs)
scaffold0062 (163-210)||(7471-7518)
[»] chr7 (8 HSPs)
chr7 (160-206)||(23198770-23198816)
chr7 (160-213)||(9893094-9893147)
chr7 (160-213)||(39706614-39706667)
chr7 (160-213)||(41132438-41132491)
chr7 (172-213)||(44639647-44639688)
chr7 (159-220)||(48065195-48065256)
chr7 (161-209)||(2450575-2450623)
chr7 (160-212)||(27993044-27993096)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4963585 - 4963358
Alignment:
Q  1 tgagattgatatagaagttggaaaaattaaagcttttagtgtgtagcgtg-------ggacagagaaattggagnnnnnnnttagatgaaatgaagggaa 93  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||       |||||||||||||||||       |||||||||||||||||||    
T  4963585 tgagattgatatagaagttgaaaaaattaaagtttttagtgtgtagcgtgtagcgtgggacagagaaattggagaaaaaaattagatgaaatgaagggaa 4963486  T
Q  94 atagtaaacttatgggctnnnnnnnntgagacggaaacattgtcgcaagattaattagaaaattgagtcctcgtgagtttaactcaattgatatgaacaa 193  Q
    ||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  4963485 atagtaaacttatgggctaaaaaaaatgagacggaaacattgtcgcaagattaattagaaaattgagtcctcgtgagtttagctcaattgatatggacaa 4963386  T
Q  194 cacataaaatatgtaaggttggggttcg 221  Q
    ||||||||||||||||||| ||||||||    
T  4963385 cacataaaatatgtaaggtcggggttcg 4963358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 26331900 - 26331954
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacat-aaaatatgtaaggtt 213  Q
    ||||||||||||||||||||||||  |||||||| |||| |||||||||||||||    
T  26331900 gtcctcgtgagtttaactcaattggcatgaacaatacataaaaatatgtaaggtt 26331954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 38340387 - 38340334
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||||||| |||||||| ||| |||| |||| |||||||||||||||||||    
T  38340387 gtcctcgtgagcttaactcagttggtatggacaatacataaaatatgtaaggtt 38340334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 10399246 - 10399296
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataa-aatatgtaa 209  Q
    |||||||||||||||| ||||||| ||||||||| |||||| |||||||||    
T  10399246 gtcctcgtgagtttaattcaattggtatgaacaatacataataatatgtaa 10399296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 35021534 - 35021472
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt-ggggttcg 221  Q
    ||||||||||| ||| |||| |||||||| |||| |||||||||||| |||||| ||||||||    
T  35021534 gtcctcgtgagcttagctcagttgatatggacaatacataaaatatgcaaggttcggggttcg 35021472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 21729140 - 21729197
Alignment:
Q  164 tcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggttggggttcg 221  Q
    |||||||||||||||| || ||| |||||  |||||| |||||||||| |||||||||    
T  21729140 tcgtgagtttaactcagttaataggaacattacataatatatgtaaggatggggttcg 21729197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 41536920 - 41536969
Alignment:
Q  164 tcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||||||||||||||||||| | |||| |||||| ||||| ||||||    
T  41536920 tcgtgagtttaactcaattgataaggacaatacataatatatgcaaggtt 41536969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 56298185 - 56298140
Alignment:
Q  166 gtgagtttaactcaattgatatgaacaacacataaaatatgtaagg 211  Q
    |||||||||||||||||| |||||||||  ||||| ||||||||||    
T  56298185 gtgagtttaactcaattgttatgaacaatgcataatatatgtaagg 56298140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 42773059 - 42773099
Alignment:
Q  173 taactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||| |||||||| |||| |||||||||||||||||||    
T  42773059 taactcagttgatatggacaatacataaaatatgtaaggtt 42773099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 43722759 - 43722811
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||||||||||||||||||| ||| |||| ||||  ||||| |||||||||||    
T  43722759 gtcctcgtgagtttaactcagttggtatggacaatgcataatatatgtaaggt 43722811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 56565050 - 56564998
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    ||||||||||| ||| ||||||||||||| ||||  ||||||||||| |||||    
T  56565050 gtcctcgtgagcttagctcaattgatatggacaatgcataaaatatgcaaggt 56564998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 51046137 - 51046189
Alignment:
Q  161 tcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  51046137 tcctcgtgagtttaactcagttggtatgaacaatacataaaatatgtaaggtt 51046189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 43840392 - 43840342
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaag 210  Q
    |||||||||||||||||||| |||||||| ||||  |||||||||||||||    
T  43840392 gtcctcgtgagtttaactcagttgatatggacaatgcataaaatatgtaag 43840342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Original strand, 11410627 - 11410683
Alignment:
Q  166 gtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt-tggggttcg 221  Q
    ||||| |||||||| ||| ||||||||| |||||||||||||||||| |||||||||    
T  11410627 gtgagcttaactcagttggtatgaacaatacataaaatatgtaaggtctggggttcg 11410683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 44366015 - 44365965
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaag 210  Q
    |||||||||||||||||||| ||| || |||||| |||||| |||||||||    
T  44366015 gtcctcgtgagtttaactcagttggtaggaacaatacataatatatgtaag 44365965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 9527991 - 9528044
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||||||| ||| || ||||||| ||||||| |||||||||||| ||||||    
T  9527991 gtcctcgtgagcttagctaaattgatttgaacaatacataaaatatgcaaggtt 9528044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 14907106 - 14907045
Alignment:
Q  157 tgagtcctcgtgagtttaactcaattgatatgaacaacacataa-aatatgtaaggttgggg 217  Q
    |||||||||||||| |||||||||||| |||||||||   |||| |||||||||||| ||||    
T  14907106 tgagtcctcgtgagcttaactcaattggtatgaacaatgtataataatatgtaaggtcgggg 14907045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 41032925 - 41032970
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatat 205  Q
    ||||||||||| |||||||| |||||||||||||  ||||||||||    
T  41032925 gtcctcgtgagcttaactcagttgatatgaacaatgcataaaatat 41032970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 1454515 - 1454567
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||||||| ||||||||||| |||||||| ||||  |||||||||||| ||||    
T  1454515 gtcctcgtaagtttaactcagttgatatggacaatgcataaaatatgtgaggt 1454567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 25165159 - 25165107
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    ||||| |||||||||||||||||| |||| ||||  ||||| |||||||||||    
T  25165159 gtcctagtgagtttaactcaattggtatggacaatgcataatatatgtaaggt 25165107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 45701326 - 45701374
Alignment:
Q  164 tcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    ||||||||||| |||| ||| |||||||||  |||||||||||||||||    
T  45701326 tcgtgagtttagctcagttggtatgaacaatgcataaaatatgtaaggt 45701374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 9665304 - 9665356
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||||||||||||||||||||||| ||||||||| | |||| |||||||||||    
T  9665304 gtcctcgtgagtttaactcaattggtatgaacaatatataatatatgtaaggt 9665356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 12329270 - 12329323
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    |||| |||||| ||| |||| ||| ||||||||| |||||||||||||||||||    
T  12329270 gtccccgtgagcttagctcagttgttatgaacaatacataaaatatgtaaggtt 12329323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 13496109 - 13496162
Alignment:
Q  159 agtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||||||||||| |||||||| |||||||||||||  ||||| ||||| |||||    
T  13496109 agtcctcgtgagcttaactcagttgatatgaacaatgcataatatatgcaaggt 13496162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 14350947 - 14350988
Alignment:
Q  164 tcgtgagtttaactcaattgatatgaacaacacataaaatat 205  Q
    |||||||||||||||| |||||||||||||  ||||||||||    
T  14350947 tcgtgagtttaactcagttgatatgaacaatgcataaaatat 14350988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 39433404 - 39433466
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt-tggggttcg 221  Q
    ||||||||||| ||| |||| ||||||||||||| |||||||||||| ||||| |||||||||    
T  39433404 gtcctcgtgagcttagctcagttgatatgaacaatacataaaatatgcaaggtctggggttcg 39433466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 3456876 - 3456828
Alignment:
Q  172 ttaactcaattgatatgaacaacacataaaatatgtaaggttggggttc 220  Q
    ||||||||||||||||||||||  ||||| |||||||||||| ||||||    
T  3456876 ttaactcaattgatatgaacaatgcataatatatgtaaggttcgggttc 3456828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 1765017 - 1764975
Alignment:
Q  164 tcgtgagtttaactcaattgatatgaacaacacataaaatatg 206  Q
    ||||||| |||||||| |||||||||||||| |||||||||||    
T  1765017 tcgtgagcttaactcagttgatatgaacaacgcataaaatatg 1764975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 7380034 - 7380095
Alignment:
Q  156 ttgagtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggttgggg 217  Q
    ||||||||||||||| ||| |||||||| |||| |||| |||||| ||||  ||||||||||    
T  7380034 ttgagtcctcgtgagcttagctcaattgttatggacaatacataatatatacaaggttgggg 7380095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 46337294 - 46337245
Alignment:
Q  163 ctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||||||| |||||||||| | ||||||||| ||||||||||||||||||    
T  46337294 ctcgtgagcttaactcaatcggtatgaacaatacataaaatatgtaaggt 46337245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 7827502 - 7827554
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||||||||||||||||||| |||||||| ||||  ||||| |||||||||||    
T  7827502 gtcctcgtgagtttaactcagttgatatggacaatgcataatatatgtaaggt 7827554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 7829890 - 7829942
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||||||||||||||||||| |||||||| ||||  ||||| |||||||||||    
T  7829890 gtcctcgtgagtttaactcagttgatatggacaatgcataatatatgtaaggt 7829942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 29791774 - 29791823
Alignment:
Q  164 tcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    |||||||||||||||| ||||||  ||||| |||||| ||||||||||||    
T  29791774 tcgtgagtttaactcagttgatagaaacaatacataatatatgtaaggtt 29791823  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 36170157 - 36170124
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaa 193  Q
    ||||||||||| ||||||||||||||||||||||    
T  36170157 gtcctcgtgagcttaactcaattgatatgaacaa 36170124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 49088750 - 49088799
Alignment:
Q  164 tcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||||||| |||| ||||||| |||||  ||||||||||||||||||    
T  49088750 tcgtgagtttagctcagttgatataaacaatgcataaaatatgtaaggtt 49088799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 53162192 - 53162245
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||||||| ||| ||||||||||||| ||||  ||||||||||| ||||||    
T  53162192 gtcctcgtgagcttagctcaattgatatggacaatgcataaaatatgcaaggtt 53162245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 6835161 - 6835213
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    ||||||||||| |||||||||||| ||  ||||| |||||| |||||||||||    
T  6835161 gtcctcgtgagcttaactcaattggtaaaaacaaaacataatatatgtaaggt 6835213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 7824801 - 7824853
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||||||||||||||||||| |||||||  |||| |||||| ||||| |||||    
T  7824801 gtcctcgtgagtttaactcagttgatatagacaatacataatatatgcaaggt 7824853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 28244171 - 28244119
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    ||||||||||| |||||||| ||| |||||||||  ||||||||||| |||||    
T  28244171 gtcctcgtgagcttaactcagttggtatgaacaatgcataaaatatgcaaggt 28244119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 43345074 - 43345022
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    ||||||||||||||| |||| ||| ||||||||| |||||| ||||| |||||    
T  43345074 gtcctcgtgagtttagctcagttggtatgaacaatacataatatatgcaaggt 43345022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 48418415 - 48418375
Alignment:
Q  172 ttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||||||| ||||||||||||| ||||||||||| ||||||    
T  48418415 ttaactcagttgatatgaacaaaacataaaatatataaggt 48418375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 44026602 - 44026655
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||||||| |||||||||||| |||| ||||| ||||| ||||||||||||    
T  44026602 gtcctcgtgagcttaactcaattggtatggacaacgcataatatatgtaaggtt 44026655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 7121824 - 7121782
Alignment:
Q  163 ctcgtgagtttaactcaattgatatgaacaacacataaaatat 205  Q
    ||||||||||||||||||||||||| |||||  ||||||||||    
T  7121824 ctcgtgagtttaactcaattgatataaacaatgcataaaatat 7121782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 14776608 - 14776658
Alignment:
Q  161 tcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaagg 211  Q
    ||||||||||||||||| ||||| |||||||||  ||||||||||| ||||    
T  14776608 tcctcgtgagtttaacttaattggtatgaacaatgcataaaatatggaagg 14776658  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 35327353 - 35327402
Alignment:
Q  163 ctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    ||||||||||||||||| |||||||||||||   ||||||||||| ||||    
T  35327353 ctcgtgagtttaactcagttgatatgaacaatgtataaaatatgttaggt 35327402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 6723147 - 6723111
Alignment:
Q  157 tgagtcctcgtgagtttaactcaattgatatgaacaa 193  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  6723147 tgagtcctcgtgagtttaactcagttgatatggacaa 6723111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 23718929 - 23718981
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||| |||||||||| |||| ||||| |||||||| ||||||||||| |||||    
T  23718929 gtccacgtgagtttagctcagttgatttgaacaacgcataaaatatgcaaggt 23718981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 24106601 - 24106653
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||| |||||||||| |||| ||||| |||||||| ||||||||||| |||||    
T  24106601 gtccacgtgagtttagctcagttgatttgaacaacgcataaaatatgcaaggt 24106653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 24548111 - 24548163
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    |||||||||||||||||||||||| |||  ||||  ||||| |||||||||||    
T  24548111 gtcctcgtgagtttaactcaattggtatagacaatgcataatatatgtaaggt 24548163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 34388622 - 34388654
Alignment:
Q  154 aattgagtcctcgtgagtttaactcaattgata 186  Q
    |||||||||||||||||||||||||| ||||||    
T  34388622 aattgagtcctcgtgagtttaactcagttgata 34388654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 24498578 - 24498630
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    ||||||||||| |||||||| |||||||||| ||  |||||||||||||||||    
T  24498578 gtcctcgtgagcttaactcagttgatatgaataatgcataaaatatgtaaggt 24498630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 25385053 - 25385099
Alignment:
Q  167 tgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||||||||||||| |||||||||  ||||||||||| ||||||    
T  25385053 tgagtttaactcaattggtatgaacaatgcataaaatatgcaaggtt 25385099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 32559298 - 32559359
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt-tggggttc 220  Q
    ||||||||||| ||| ||||||||||||  ||||  ||||||||||||||||| ||||||||    
T  32559298 gtcctcgtgagcttagctcaattgatattgacaatgcataaaatatgtaaggtctggggttc 32559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 41266380 - 41266433
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||| ||||||||| ||||||||||| | |||| |||||| ||||||||||||    
T  41266380 gtccttgtgagtttagctcaattgataaggacaaaacataatatatgtaaggtt 41266433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 16193102 - 16193154
Alignment:
Q  161 tcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||||||||||  ||| ||| |||||||||  ||||||||||||||||||    
T  16193102 tcctcgtgagtttagttcagttggtatgaacaatgcataaaatatgtaaggtt 16193154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 25928908 - 25928948
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataa 200  Q
    ||||||||||| ||||||||||||||||| |||| ||||||    
T  25928908 gtcctcgtgagcttaactcaattgatatggacaatacataa 25928948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 7471 - 7518
Alignment:
Q  163 ctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaag 210  Q
    |||||||| |||||||||||| |||||||||  |||||||||||||||    
T  7471 ctcgtgagcttaactcaattggtatgaacaatgcataaaatatgtaag 7518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 23198816 - 23198770
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatg 206  Q
    |||||||||||||||||||| ||| |||||||||  |||||||||||    
T  23198816 gtcctcgtgagtttaactcagttggtatgaacaatgcataaaatatg 23198770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 9893147 - 9893094
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||| ||||| ||| ||||||||||||| |||| |||||||||||| ||||||    
T  9893147 gtcctggtgagcttatctcaattgatatggacaatacataaaatatgcaaggtt 9893094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 39706614 - 39706667
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    ||||||||||| |||||||||||| ||| ||||| |||||| ||||| ||||||    
T  39706614 gtcctcgtgagattaactcaattggtataaacaatacataatatatgcaaggtt 39706667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 41132438 - 41132491
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    |||| |||||| ||| |||||||||| ||||||| |||||||||||| ||||||    
T  41132438 gtccacgtgagcttagctcaattgatttgaacaatacataaaatatgcaaggtt 41132491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 44639647 - 44639688
Alignment:
Q  172 ttaactcaattgatatgaacaacacataaaatatgtaaggtt 213  Q
    |||||||||||| ||||||||| |||||| ||||||||||||    
T  44639647 ttaactcaattggtatgaacaatacataatatatgtaaggtt 44639688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 48065195 - 48065256
Alignment:
Q  159 agtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggttggggttc 220  Q
    |||||||||||| |||||||||||| |||| ||||  ||||| ||||| ||||| |||||||    
T  48065195 agtcctcgtgagcttaactcaattggtatggacaattcataatatatgcaaggtcggggttc 48065256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 2450575 - 2450623
Alignment:
Q  161 tcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaa 209  Q
    |||| ||||| |||||||| ||| ||||||||| |||||||||||||||    
T  2450575 tccttgtgagcttaactcagttggtatgaacaatacataaaatatgtaa 2450623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 27993096 - 27993044
Alignment:
Q  160 gtcctcgtgagtttaactcaattgatatgaacaacacataaaatatgtaaggt 212  Q
    ||||||||||| |||||||| ||| |||||||||  ||||||||||| |||||    
T  27993096 gtcctcgtgagcttaactcagttggtatgaacaatgcataaaatatgcaaggt 27993044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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