View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4850_high_59 (Length: 237)

Name: NF4850_high_59
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4850_high_59
NF4850_high_59
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-223)||(22884-23104)
[»] chr2 (14 HSPs)
chr2 (1-223)||(1277987-1278207)
chr2 (2-100)||(44966084-44966182)
chr2 (2-54)||(27269160-27269212)
chr2 (2-100)||(34929256-34929354)
chr2 (2-61)||(8996592-8996651)
chr2 (2-60)||(40711233-40711291)
chr2 (2-59)||(25220763-25220820)
chr2 (6-99)||(31663463-31663555)
chr2 (11-99)||(20683617-20683705)
chr2 (65-100)||(34504160-34504195)
chr2 (34-100)||(32644907-32644973)
chr2 (2-48)||(44022223-44022269)
chr2 (64-100)||(18734565-18734601)
chr2 (20-60)||(34242397-34242437)
[»] chr1 (13 HSPs)
chr1 (1-100)||(15279063-15279162)
chr1 (2-99)||(34710974-34711071)
chr1 (6-100)||(39275820-39275914)
chr1 (2-60)||(51295778-51295836)
chr1 (5-100)||(24466598-24466694)
chr1 (2-93)||(10881890-10881981)
chr1 (1-60)||(33828132-33828191)
chr1 (1-60)||(33839774-33839833)
chr1 (2-60)||(18023844-18023902)
chr1 (2-60)||(51050111-51050169)
chr1 (2-89)||(3144017-3144104)
chr1 (2-41)||(44595760-44595799)
chr1 (6-60)||(29587188-29587242)
[»] chr5 (22 HSPs)
chr5 (2-100)||(14575986-14576084)
chr5 (2-99)||(40298317-40298414)
chr5 (6-98)||(8233975-8234067)
chr5 (6-100)||(36527395-36527489)
chr5 (1-100)||(14622510-14622609)
chr5 (1-100)||(19961522-19961621)
chr5 (2-100)||(3938375-3938473)
chr5 (2-99)||(30721368-30721465)
chr5 (2-101)||(1860217-1860317)
chr5 (2-100)||(13951157-13951255)
chr5 (6-100)||(25983031-25983125)
chr5 (2-99)||(30685546-30685643)
chr5 (2-60)||(730784-730842)
chr5 (6-60)||(3257481-3257535)
chr5 (2-100)||(18334446-18334544)
chr5 (2-60)||(33208428-33208486)
chr5 (2-79)||(15591716-15591793)
chr5 (1-60)||(25693665-25693727)
chr5 (2-60)||(14309962-14310020)
chr5 (60-100)||(3557860-3557900)
chr5 (64-100)||(10020695-10020731)
chr5 (72-100)||(10333781-10333809)
[»] chr4 (22 HSPs)
chr4 (1-100)||(38354254-38354353)
chr4 (2-100)||(31216966-31217064)
chr4 (2-100)||(53133449-53133547)
chr4 (2-99)||(9319862-9319959)
chr4 (1-73)||(41236077-41236149)
chr4 (2-98)||(55323003-55323099)
chr4 (2-100)||(34118962-34119060)
chr4 (2-100)||(49250101-49250199)
chr4 (2-97)||(42674003-42674098)
chr4 (2-100)||(26740740-26740838)
chr4 (1-100)||(17340300-17340397)
chr4 (2-60)||(45891312-45891370)
chr4 (2-99)||(50328434-50328531)
chr4 (4-51)||(4442251-4442298)
chr4 (2-45)||(16067834-16067877)
chr4 (6-81)||(24453154-24453229)
chr4 (1-75)||(31204370-31204444)
chr4 (2-56)||(47388488-47388542)
chr4 (1-47)||(8171077-8171124)
chr4 (2-53)||(37056205-37056256)
chr4 (18-100)||(966673-966755)
chr4 (66-99)||(18371073-18371106)
[»] chr6 (9 HSPs)
chr6 (2-100)||(17515390-17515488)
chr6 (2-99)||(9429627-9429723)
chr6 (2-52)||(3337655-3337705)
chr6 (2-55)||(24548045-24548098)
chr6 (2-99)||(30323102-30323199)
chr6 (4-56)||(2359676-2359728)
chr6 (8-100)||(2557341-2557433)
chr6 (2-99)||(2616973-2617070)
chr6 (68-102)||(2588763-2588797)
[»] chr3 (15 HSPs)
chr3 (1-100)||(24657285-24657384)
chr3 (6-100)||(53287385-53287479)
chr3 (2-99)||(32733594-32733691)
chr3 (2-60)||(28392200-28392258)
chr3 (2-100)||(39990757-39990855)
chr3 (2-100)||(41519557-41519655)
chr3 (6-99)||(20378993-20379086)
chr3 (2-101)||(30732757-30732856)
chr3 (6-99)||(49447622-49447715)
chr3 (1-51)||(12789930-12789980)
chr3 (2-99)||(42791122-42791218)
chr3 (5-60)||(28554175-28554229)
chr3 (43-100)||(37311627-37311684)
chr3 (2-43)||(38627754-38627795)
chr3 (3-55)||(49230059-49230111)
[»] chr7 (11 HSPs)
chr7 (2-101)||(48046941-48047040)
chr7 (2-99)||(40019820-40019917)
chr7 (2-89)||(48633981-48634068)
chr7 (11-59)||(42306573-42306621)
chr7 (5-60)||(20009715-20009769)
chr7 (2-100)||(43951939-43952037)
chr7 (2-60)||(45671787-45671845)
chr7 (2-79)||(3398900-3398976)
chr7 (8-80)||(39983054-39983126)
chr7 (2-59)||(43251934-43251991)
chr7 (2-46)||(17354394-17354438)
[»] chr8 (12 HSPs)
chr8 (1-60)||(4989280-4989339)
chr8 (2-60)||(39108599-39108657)
chr8 (5-85)||(36434658-36434739)
chr8 (2-95)||(40740670-40740763)
chr8 (2-100)||(4993293-4993389)
chr8 (6-81)||(35878953-35879028)
chr8 (34-100)||(6108728-6108794)
chr8 (2-51)||(5957059-5957108)
chr8 (2-100)||(10361187-10361286)
chr8 (2-47)||(11008065-11008110)
chr8 (11-100)||(38666347-38666436)
chr8 (4-56)||(44976177-44976228)
[»] scaffold0027 (1 HSPs)
scaffold0027 (2-50)||(16852-16900)
[»] scaffold0050 (1 HSPs)
scaffold0050 (2-44)||(37802-37844)
[»] scaffold0007 (1 HSPs)
scaffold0007 (66-99)||(176325-176358)
[»] scaffold0006 (1 HSPs)
scaffold0006 (2-51)||(50663-50712)


Alignment Details
Target: scaffold0119 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22884 - 23104
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||||||||||||| | ||| ||| || |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  22884 tattaaaaagttaaagattaaatgta-tgcgcacgttccaataaattatttatatatttgccatattaatttgtgtcttaagggcacaaattaacatttc 22982  T
Q  101 attttcctaaataaatatattctttcgatatcagtttaatggagcaaggtgattcaggcatatggtcgtgaggttaactacctttgttagcttgagtgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  22983 attttcctaaataaatatattctttcgatatcagtttaatgga-caaggtgattcaggcatacggtcgtgaggttaactacccttgttagcttgagtgta 23081  T
Q  201 cacctcatcgacatgcactaatt 223  Q
    |||||||||||||||||||||||    
T  23082 cacctcatcgacatgcactaatt 23104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1278207 - 1277987
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||||||||||||| | ||| ||| || |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  1278207 tattaaaaagttaaagattaaatgta-tgcgcacgttccaataaattatttatatatttgccatattaatttgtgtcttaagggcacaaattaacatttc 1278109  T
Q  101 attttcctaaataaatatattctttcgatatcagtttaatggagcaaggtgattcaggcatatggtcgtgaggttaactacctttgttagcttgagtgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  1278108 attttcctaaataaatatattctttcgatatcagtttaatgga-caaggtgattcaggcatacggtcgtgaggttaactacccttgttagcttgagtgta 1278010  T
Q  201 cacctcatcgacatgcactaatt 223  Q
    |||||||||||||||||||||||    
T  1278009 cacctcatcgacatgcactaatt 1277987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 44966084 - 44966182
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||| || ||||||||    ||||||||||| ||||||||||||| ||||||||||    
T  44966084 attaaaaagttaaagattaaatgcaatgcacacattccaataaattaattctatatttgaatcattaacttgtgccttaagggcacaagttaacatttc 44966182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 27269160 - 27269212
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttata 54  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  27269160 attaaaaagttaaaggttaaatgaaatgcacacatttcaataaattatttata 27269212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 34929256 - 34929354
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||  |||||||||||||  ||||||| |||| ||||| ||||||| || ||||| | ||| |||||||| ||||||||||||| ||||||||||    
T  34929256 attaaaacattaaagattaaatttaatgcacgcattccaatacattatttctacatttggcttataaacttgtgccttaagggcacaagttaacatttc 34929354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 8996592 - 8996651
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgt 61  Q
    ||||||||| |||| |||||||||||||||||||||| ||| || ||||| |||||||||    
T  8996592 attaaaaagctaaacattaaatggaatgcacacattttaatgaactatttctatatttgt 8996651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 40711233 - 40711291
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    |||||||||||||| |||||||  ||| ||||||||||||||||| |||| ||||||||    
T  40711233 attaaaaagttaaaaattaaatacaatacacacatttcaataaataatttttatatttg 40711291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 25220820 - 25220763
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatattt 59  Q
    |||||||| |||||||||||| | ||| |||| ||||||||||||||||| |||||||    
T  25220820 attaaaaaattaaagattaaaagcaatacacaaatttcaataaattatttctatattt 25220763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 31663463 - 31663555
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    |||||||||| |||||||  |||||||||||| ||||||| |||||||||||||||   ||||||||||   |||| | ||||| |||||||||    
T  31663463 aaaagttaaa-attaaatataatgcacacattccaataaactatttatatatttgtttaattaacttgtactttaatgacacaagttaacattt 31663555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 20683617 - 20683705
Alignment:
Q  11 ttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    |||||||||||||  || |||  |||| ||||| ||||||| || ||||||| | | ||||||| |||||||||||||| |||||||||    
T  20683617 ttaaagattaaatttaaagcatgcattccaatacattatttctacatttgtcttctaaacttgtatcttaagggcacaagttaacattt 20683705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 100
Target Start/End: Complemental strand, 34504195 - 34504160
Alignment:
Q  65 attaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||||||||| ||||||||||    
T  34504195 attaacttgtgtcttaagggcacaagttaacatttc 34504160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 32644907 - 32644973
Alignment:
Q  34 catttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||| ||||| ||||||| |||||||| | | | |||||||||||||| ||||||| ||||||||||    
T  32644907 cattccaatacattatttttatatttggcttctaaacttgtgtcttaaaggcacaagttaacatttc 32644973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 44022223 - 44022269
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaatta 48  Q
    |||||||||||||| |||||||| || |||| |||||||||||||||    
T  44022223 attaaaaagttaaaaattaaatgtaaggcacgcatttcaataaatta 44022269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 18734565 - 18734601
Alignment:
Q  64 tattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  18734565 tattaacttgtgtcttaatggcacaagttaacatttc 18734601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 34242437 - 34242397
Alignment:
Q  20 aaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    ||||| |||||| ||||| ||||||||||||||||||||||    
T  34242437 aaatgtaatgcatacattccaataaattatttatatatttg 34242397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 15279063 - 15279162
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||| |||||||| ||||||||||||  |||||||||||| ||||||||    |||||||||||||||||||||| |||||||||||||    
T  15279063 tattaaaaagttaaatattaaatgcaatgcacacattctaataaattatttctatatttgaatcattaacttgtgtcttaagggcagaaattaacatttc 15279162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 34710974 - 34711071
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    ||||||||| ||||||||||||| ||| ||||||||||||| |  ||||| |||||||||   ||||||||||||| ||||||||||| |||||||||    
T  34710974 attaaaaagctaaagattaaatgtaatacacacatttcaatgagctatttctatatttgtttcattaacttgtgtcataagggcacaagttaacattt 34711071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 39275914 - 39275820
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||||| ||||    |||||||||||  ||||| |||||| ||||||||||    
T  39275914 aaaagttaaagattaaataaaatgcacacatttcaataatttatttatatgtttgaatcattaacttgtgctttaagcgcacaagttaacatttc 39275820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 51295778 - 51295836
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||    
T  51295778 attaaaaagttaaagattaaatgtaatgcacacattccaataaattatttctacatttg 51295836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 24466598 - 24466694
Alignment:
Q  5 aaaaagttaaagattaaatggaatgcacac-atttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||||||||| |||||||||  ||| |||||| ||||| | ||||||   |||||||||||||||||||| ||||| ||| ||||||    
T  24466598 aaaaagttaaagattaaatgtaatgcacacgtttttaataaactatttctttatttgatttattaacttgtgtcttaaggtcacaagttagcatttc 24466694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 10881890 - 10881981
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaatta 93  Q
    |||||||| |||||||||||||| ||||||||||||  ||||||  |||| ||||||||    |||||||||| | ||||||||||||||||    
T  10881890 attaaaaaattaaagattaaatgtaatgcacacattctaataaacaatttctatatttgatgcattaacttgtatattaagggcacaaatta 10881981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33828132 - 33828191
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    |||||||||||||||||||| ||| ||| |||||||| ||||||| ||||||||||||||    
T  33828132 tattaaaaagttaaagattagatgtaatacacacattccaataaactatttatatatttg 33828191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33839833 - 33839774
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    |||||||||||||||||||| ||| ||| |||||||| ||||||| ||||||||||||||    
T  33839833 tattaaaaagttaaagattagatgtaatacacacattccaataaactatttatatatttg 33839774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 18023844 - 18023902
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    |||||||||||||||||||| || | |||||| ||||||||||||||||| ||||||||    
T  18023844 attaaaaagttaaagattaattgcagtgcacatatttcaataaattatttctatatttg 18023902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 51050111 - 51050169
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    |||||||| |||| ||||||||| | | |||||||| ||||||||||||||||||||||    
T  51050111 attaaaaaattaacgattaaatgtattacacacattccaataaattatttatatatttg 51050169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 3144104 - 3144017
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaa 89  Q
    ||||||||| ||||||||||| | ||| || | ||| ||||||| ||||| |||||||||  ||||| | |||||||||||| |||||    
T  3144104 attaaaaagctaaagattaaacgtaatacatatattccaataaactatttctatatttgttttattagcctgtgtcttaaggacacaa 3144017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 44595760 - 44595799
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaa 41  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  44595760 attaaaaagttaaagtttaaatgtaatgcacacatttcaa 44595799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 29587188 - 29587242
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    |||||||||||| |||||  |||||||||||| |||||| |||||| ||||||||    
T  29587188 aaaagttaaagactaaataaaatgcacacattccaataatttatttctatatttg 29587242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 14575986 - 14576084
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||| ||| |||| |||||||||||||| ||||| ||||| |||||||  | ||||||||| |||||||||||||||||||||||||||    
T  14575986 attaaaaagttaaatattcaatgtaatgcacacatttcgataaactatttctatattttacttattaacttatgtcttaagggcacaaattaacatttc 14576084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 40298317 - 40298414
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    ||||||| ||||||||||||||| |||| |||||||  |||||||||||| |||||||  | ||||||||||| ||||||| ||||||||||||||||    
T  40298317 attaaaatgttaaagattaaatgtaatgtacacattctaataaattatttttatatttaacttattaacttgtatcttaagagcacaaattaacattt 40298414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 8234067 - 8233975
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatt 98  Q
    ||||||||||||||||||  |||||||||| | ||||||||||||| | ||||||   |||||| ||||||||||||||||||| ||||||||    
T  8234067 aaaagttaaagattaaatttaatgcacacaatccaataaattatttctttatttgaattattaatttgtgtcttaagggcacaagttaacatt 8233975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 36527489 - 36527395
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||| ||||||||  | ||||||||||| | | ||||||||| ||||||||||    
T  36527489 aaaagttaaagattaaatgcaatgcacacactccaataaactatttctatatttgatacattaacttgtgccctcagggcacaacttaacatttc 36527395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 14622510 - 14622609
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||| ||||||||| ||| |||| ||||||||| || ||||||||||||| ||||||||    |||||||||||| ||||| |||||||||| ||||||    
T  14622510 tattagaaagttaaatattgaatgaaatgcacaccttccaataaattatttctatatttgaatcattaacttgtgttttaagagcacaaattagcatttc 14622609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 19961621 - 19961522
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||| |||||||||||||| ||| |||||||| ||||||| ||||| ||  ||||    ||||||||||||| ||||| ||||||||||||||||    
T  19961621 tattaaaaaattaaagattaaatgaaatacacacattccaataaactatttctacttttgattcattaacttgtgtcataaggacacaaattaacatttc 19961522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 3938473 - 3938375
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||| ||| | |||||||| |||||| ||||| ||||||||||||| |||||||     |||||||||||||||||| ||||||||||| |||||    
T  3938473 attaaaaaattagatattaaatgcaatgcatacattccaataaattatttctatatttaaatcattaacttgtgtcttaagagcacaaattaatatttc 3938375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 30721465 - 30721368
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    |||||||| ||||| |||||||| |||||||||||||||||||| ||||| |||||||||   ||||  ||||| ||||| | ||||| |||||||||    
T  30721465 attaaaaaattaaaaattaaatgtaatgcacacatttcaataaactatttctatatttgtttcattagtttgtgccttaaagacacaagttaacattt 30721368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 1860217 - 1860317
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatat-atttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||| | | |||||||||| |||||||||||||||||||||||||| ||| |||||    |||||||||||  |||||||||||| ||| ||||||    
T  1860217 attaaaaaatgagagattaaatgtaatgcacacatttcaataaattatttttataatttgatgcattaacttgtgctttaagggcacaatttagcatttc 1860316  T
Q  101 a 101  Q
    |    
T  1860317 a 1860317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 13951157 - 13951255
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||||| | ||||||||  || ||||||||||||| ||||||||    ||||| ||||||||| ||| || || ||||||||||    
T  13951157 attaaaaagttaaagattaaacgcaatgcacattttccaataaattatttttatatttgaatcattaatttgtgtcttgaggccaaaagttaacatttc 13951255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 25983125 - 25983031
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||     |||||||| |||||| ||| ||||| ||| ||||||    
T  25983125 aaaagttaaagattaaatgcaatgcacatattccaataaattatttctatatttaaatcattaacttatgtcttgaggacacaagttagcatttc 25983031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 30685643 - 30685546
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    ||||||||  |||| |||||||| |||||||| ||||||||||| ||||| |||||||||   ||||  || ||||||||| |||||| |||||||||    
T  30685643 attaaaaaactaaaaattaaatgtaatgcacatatttcaataaactatttctatatttgtttcattagtttatgtcttaagagcacaagttaacattt 30685546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 730784 - 730842
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    ||||||||||| ||||||||||| ||| ||||||||  |||||||||||| ||||||||    
T  730784 attaaaaagttcaagattaaatgtaatacacacattctaataaattatttctatatttg 730842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 3257481 - 3257535
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    ||||||||||||||||||| |||||||| ||| ||||||| ||||| ||||||||    
T  3257481 aaaagttaaagattaaatgaaatgcacatattccaataaactatttttatatttg 3257535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 18334446 - 18334544
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||| || |||||||| ||||||||||||  ||||| || ||| ||||||||    ||||||||||| | | ||||||||| ||||||||||    
T  18334446 attaaaaagtttaatattaaatgcaatgcacacattcaaataagttttttctatatttgaatcattaacttgtgccctcagggcacaagttaacatttc 18334544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 33208486 - 33208428
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    |||||||||||||| |||||||  ||| || ||||||||||||||||||| ||||||||    
T  33208486 attaaaaagttaaatattaaatttaatacatacatttcaataaattatttctatatttg 33208428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 15591716 - 15591793
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtctt 79  Q
    |||||||| |||||||||||| |||||||| |||| |||| ||| ||||| ||||||||    |||||||||||||||    
T  15591716 attaaaaaattaaagattaaaaggaatgcatacatctcaacaaactatttctatatttgattcattaacttgtgtctt 15591793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25693727 - 25693665
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacac---atttcaataaattatttatatatttg 60  Q
    |||||||||||||||||||||||  |||||||||   ||| ||||||||||||| ||||||||    
T  25693727 tattaaaaagttaaagattaaatttaatgcacacattattccaataaattatttttatatttg 25693665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 14309962 - 14310020
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    ||||||||||||||| ||||||| |||| ||| ||| |||| |||||||| ||||||||    
T  14309962 attaaaaagttaaagtttaaatgcaatgtacatattccaatcaattatttctatatttg 14310020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 3557860 - 3557900
Alignment:
Q  60 gtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||| |||||||||| ||||||||||||| ||||||||||    
T  3557860 gtcatgttaacttgtgccttaagggcacaagttaacatttc 3557900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 10020731 - 10020695
Alignment:
Q  64 tattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||||||||||||||| | ||||||||    
T  10020731 tattaacttgtgtcttaagggcacaagtcaacatttc 10020695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 10333809 - 10333781
Alignment:
Q  72 tgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||||||||||||||||||    
T  10333809 tgtgtcttaagggcacaaattaacatttc 10333781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 38354353 - 38354254
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||| ||||| || |||||| ||||||||||||||||||| ||||||||    |||||||||| |||||||| ||||| ||||||||||    
T  38354353 tattaaaaagttaaacattaattgtaatgcatacatttcaataaattatttctatatttgattcattaacttgtatcttaaggacacaagttaacatttc 38354254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 31216966 - 31217064
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||||||| ||| ||||| || |||||||  |||| ||||||||   |||||||||||||||||||||||||| ||| ||||||    
T  31216966 attaaaaagttaaagattaaatgtaatacacaccttccaataaaccatttctatatttgatttattaacttgtgtcttaagggcacaagttagcatttc 31217064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 53133547 - 53133449
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||| |||||||||||||| |||||||| ||| |||| | |||||| |||||||||   ||||||||||| ||||||||||||| ||||||||||    
T  53133547 attaaaaatttaaagattaaatgtaatgcacatattccaatgagttatttctatatttgtttcattaacttgtgccttaagggcacaagttaacatttc 53133449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 9319959 - 9319862
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||||| ||||||||    ||||| ||||| ||||||||||||  |||||||||    
T  9319959 attaaaaagttaaagattaaatataatgcacacattgcaataaattatttttatatttgattaattaagttgtgccttaagggcacacgttaacattt 9319862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 41236077 - 41236149
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttg 73  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||   ||||||||||    
T  41236077 tattaaaaagttaaagattaaatgtaatgcacacattttaataaattatttctatatttgatttattaacttg 41236149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 55323003 - 55323099
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatt 98  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||    | ||||||||| ||||||||||||| ||| ||||    
T  55323003 attaaaaagttaaagattaaatgtaatgcacaaattccaataaattatttctatatttgattcactaacttgtgccttaagggcacaagttagcatt 55323099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 34118962 - 34119060
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||| ||| |||| |||||||| |||||||||||   ||| ||||||||    ||||||||||||||| ||||||||||||||||||||    
T  34118962 attaaaaagttaaatattgaatgcaatgcacatatttcaataaaaattttctatatttgaatcattaacttgtgtcttgagggcacaaattaacatttc 34119060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 49250101 - 49250199
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||||||| ||| || ||||||||||||| ||||| ||||||||   ||||||| |||  |||||||| |||| ||||||||||    
T  49250101 attaaaaagttaaagattaaatgtaatacagacatttcaataaactatttttatatttgatgtattaacctgtaccttaagggtacaagttaacatttc 49250199  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 42674098 - 42674003
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacat 97  Q
    |||||||| |||||||||||||  |||||| ||||| |||| |||||||| |||||||||   |||||||||| ||||||||| |||| |||||||    
T  42674098 attaaaaaattaaagattaaatataatgcatacattccaatgaattatttttatatttgtttcattaacttgtatcttaagggtacaacttaacat 42674003  T

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Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 26740838 - 26740740
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||| ||| ||| |||| ||| ||||||| ||||| ||||||||    |||||| ||||||||||| |||||| ||||||||||    
T  26740838 attaaaaagttaaagattacatgtaatacacatattccaataaaatatttttatatttgattcattaacgtgtgtcttaagagcacaagttaacatttc 26740740  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 17340397 - 17340300
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| |||||  |||||| | ||   |||||||| |||||||||| |||||| ||||||    
T  17340397 tattaaaaagttaaagattaaatgtaatgcacacattccaataaactattttcatattt-taat-caaacttgtgccttaagggcataaattagcatttc 17340300  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 45891370 - 45891312
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    ||||||||||||||||||||||| |||||||| | ||||||||| ||||| ||||||||    
T  45891370 attaaaaagttaaagattaaatgtaatgcacaaacttcaataaactatttctatatttg 45891312  T

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Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 50328434 - 50328531
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    ||||||||||||||||||||||| |||||||||||| |||||   ||||| ||||| ||    ||||||||||  ||||||| ||||| |||||||||    
T  50328434 attaaaaagttaaagattaaatgtaatgcacacattccaatatcctatttctatatctgattcattaacttgtaccttaaggacacaagttaacattt 50328531  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 4442298 - 4442251
Alignment:
Q  4 taaaaagttaaagattaaatggaatgcacacatttcaataaattattt 51  Q
    ||||||||||||| ||||||| |||||||||||||||||||| |||||    
T  4442298 taaaaagttaaagtttaaatgaaatgcacacatttcaataaactattt 4442251  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 16067834 - 16067877
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaa 45  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  16067834 attaaaaagttaaagattaaatgtaatacacacatttcaataaa 16067877  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 24453229 - 24453154
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaa 81  Q
    ||||||||||||||||||  |||||||| |||||||||| | ||| |||||||||   ||||||||||||| ||||    
T  24453229 aaaagttaaagattaaatttaatgcacatatttcaataactcattcatatatttgatttattaacttgtgttttaa 24453154  T

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Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31204370 - 31204444
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtg 75  Q
    |||||||||||||||||||||||| ||| ||||| || |||||||  |||| ||||||||   ||||||||||||    
T  31204370 tattaaaaagttaaagattaaatgtaatacacaccttccaataaaccatttctatatttgatttattaacttgtg 31204444  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 47388542 - 47388488
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatata 56  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||| ||||| ||||    
T  47388542 attaaaaggttaaagattaaatgtaatacacacatttcaataaaatatttttata 47388488  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8171124 - 8171077
Alignment:
Q  1 tattaaaaagttaaa-gattaaatggaatgcacacatttcaataaatt 47  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  8171124 tattaaaaagttaaaagattaaatataatgcacacatttcaataaatt 8171077  T

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Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 37056256 - 37056205
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttat 53  Q
    ||||||||||||||||||||||  ||||||| | || |||||||||||||||    
T  37056256 attaaaaagttaaagattaaatttaatgcaccctttccaataaattatttat 37056205  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 966755 - 966673
Alignment:
Q  18 ttaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||| |||| ||||||||||||||| ||||| ||||||||    ||||||||||||||| ||| | ||| ||| ||||||    
T  966755 ttaaatgtaatgtacacatttcaataaactatttctatatttgattcattaacttgtgtcttgaggacgcaagttagcatttc 966673  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 18371106 - 18371073
Alignment:
Q  66 ttaacttgtgtcttaagggcacaaattaacattt 99  Q
    |||||||||||||||||||||||| |||||||||    
T  18371106 ttaacttgtgtcttaagggcacaagttaacattt 18371073  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 17515390 - 17515488
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||||||||| |||||||    ||||| |||| |||| ||||||||| ||||||||||    
T  17515390 attaaaaagttaaagattaaatgcaatacacatatttcaataaattatttacatatttgaatcattaaattgtatcttgagggcacaagttaacatttc 17515488  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 9429627 - 9429723
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    |||||||| |||||||||||||| ||||||||||||||||| ||||||||  ||||||     ||||||||||| ||| ||||||||| |||||||||    
T  9429627 attaaaaaattaaagattaaatgcaatgcacacatttcaatgaattatttccatatttaaatcattaacttgtg-cttgagggcacaagttaacattt 9429723  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 3337705 - 3337655
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattattta 52  Q
    ||||||||||||| ||||||||| |||||||||||| ||||||||||||||    
T  3337705 attaaaaagttaacgattaaatgcaatgcacacattccaataaattattta 3337655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 24548045 - 24548098
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatat 55  Q
    ||||||||||||||||||||||| ||||||||  |||||||||| |||||||||    
T  24548045 attaaaaagttaaagattaaatgtaatgcacatttttcaataaactatttatat 24548098  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 30323102 - 30323199
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    ||||||||||||||||||||||| ||| || ||||| ||||||| ||||| ||||||||    |||||| |||| || |||| ||||| |||||||||    
T  30323102 attaaaaagttaaagattaaatgtaatacatacattccaataaactatttctatatttgatgcattaacatgtgcctaaaggacacaagttaacattt 30323199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 2359728 - 2359676
Alignment:
Q  4 taaaaagttaaagattaaatggaatgcacacatttcaataaattatttatata 56  Q
    ||||||||||| ||||||||| ||||||||| |||||||||||||||| ||||    
T  2359728 taaaaagttaacgattaaatgtaatgcacacttttcaataaattatttctata 2359676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 2557341 - 2557433
Alignment:
Q  8 aagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||  ||| ||||||||  |||||| ||||| ||||||||    |||||||| ||||||||  |||||||||||||||||    
T  2557341 aagttaaagattaaatataatacacacattctaataaagtatttttatatttgattcattaacttatgtcttaatagcacaaattaacatttc 2557433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 2617070 - 2616973
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    ||||||| ||||||| ||||||| |||||| ||||  ||||||| ||||| ||||||||    |||||||||||| ||||| |||||| ||| |||||    
T  2617070 attaaaacgttaaaggttaaatgtaatgcatacatcccaataaactatttttatatttgattcattaacttgtgttttaagagcacaagttagcattt 2616973  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 2588797 - 2588763
Alignment:
Q  68 aacttgtgtcttaagggcacaaattaacatttcat 102  Q
    |||||||||||||||||||||| ||||||||||||    
T  2588797 aacttgtgtcttaagggcacaagttaacatttcat 2588763  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 24657285 - 24657384
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| |||| ||||||||    ||| | || |||||||||||||||||||| ||||||    
T  24657285 tattaaaaagttaaagattaaatataatgcacacattccaataaataatttctatatttgaatcatttatttatgtcttaagggcacaaattatcatttc 24657384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 53287479 - 53287385
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||| | |||||||| |||||||||||| |||||||| |||| ||||||||    ||||||||||| ||||||||||||| ||||||||||    
T  53287479 aaaagttacaaattaaatgcaatgcacacattccaataaatgatttctatatttgaatcattaacttgtggcttaagggcacaagttaacatttc 53287385  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 32733691 - 32733594
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    |||||||  |||| ||||||||  |||||||| ||| ||||| ||||||| || ||||| | ||| ||||||||||||||||||||||||||||||||    
T  32733691 attaaaacattaacgattaaatttaatgcacagattccaatacattatttctacatttggcttataaacttgtgtcttaagggcacaaattaacattt 32733594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 28392200 - 28392258
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||    
T  28392200 attaaaaagttaaagattaaatgtaatgcacacatttcaataaactatttgtttatttg 28392258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 39990757 - 39990855
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||| || |||||||| ||| ||||||||||||||||||||||  || ||||    ||||||||||||||| ||||||||| ||| ||||||    
T  39990757 attaaaaagtttaatattaaatgtaattcacacatttcaataaattattttcatctttgattcattaacttgtgtcttgagggcacaagttagcatttc 39990855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 41519557 - 41519655
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||| |||||||||||||| ||||||||  |||||||||||||||| |||||| |    ||||||||||| ||| ||||||||| ||| ||||||    
T  41519557 attaaaaaattaaagattaaatgcaatgcacatttttcaataaattatttctatattcgaatcattaacttgtgccttgagggcacaagttagcatttc 41519655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 20379086 - 20378993
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    |||||||||||| |||||  ||||||||||||  ||||| |||||| ||||||||    |||||||||||| ||||||||| ||||||||||||    
T  20379086 aaaagttaaagactaaataaaatgcacacattctaataatttatttctatatttgaatcattaacttgtgtattaagggcataaattaacattt 20378993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 30732856 - 30732757
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttca 101  Q
    |||||||||||||| |||||||  |||||| ||||| ||| ||||||||| |||| |||   ||||||||||| ||||||||| |||| ||| |||||||    
T  30732856 attaaaaagttaaatattaaatacaatgcatacattccaacaaattatttttatacttgaattattaacttgtatcttaagggtacaagttagcatttca 30732757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 49447622 - 49447715
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    |||||||||||| |||||  |||||||||||| |||||| |||||| ||||||||    ||||| ||||||||||| ||||| | |||||||||    
T  49447622 aaaagttaaagactaaataaaatgcacacattccaataatttatttttatatttgaatcattaatttgtgtcttaaaggcacgagttaacattt 49447715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 12789930 - 12789980
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattattt 51  Q
    |||||||||||||||||||||||| |||| || |||||||| |||||||||    
T  12789930 tattaaaaagttaaagattaaatgtaatgtacgcatttcaaaaaattattt 12789980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 42791122 - 42791218
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 99  Q
    |||||||| ||||| |||||||| |||||||||||| | |||||||| || |||||| |    ||||||||||| |||||||||| || |||||||||    
T  42791122 attaaaaacttaaa-attaaatgtaatgcacacattcccataaattacttttatattcgatgcattaacttgtgccttaagggcaaaagttaacattt 42791218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 28554229 - 28554175
Alignment:
Q  5 aaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    ||||||||||| |||||||  ||| |||||||||||||||||||||| ||||||||    
T  28554229 aaaaagttaaa-attaaatacaatacacacatttcaataaattatttctatatttg 28554175  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 37311684 - 37311627
Alignment:
Q  43 aaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||  ||||||  ||||||||||| |||| ||||||||||||| |||||    
T  37311684 aaattatttatacttttgtctcattaacttgtgccttacgggcacaaattaatatttc 37311627  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 38627795 - 38627754
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaata 43  Q
    |||||||||||||| |||||||  ||||||||||||||||||    
T  38627795 attaaaaagttaaatattaaatacaatgcacacatttcaata 38627754  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 49230059 - 49230111
Alignment:
Q  3 ttaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatat 55  Q
    ||||||||| |||||||||||  ||| |||||||||||||| ||| |||||||    
T  49230059 ttaaaaagtaaaagattaaatataatacacacatttcaatatattttttatat 49230111  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 48046941 - 48047040
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttca 101  Q
    ||||||| | |||| |||||||| |||||||||||| |||||| | |||| ||||||||   |||||||||||| ||||||||||||| ||| |||||||    
T  48046941 attaaaaggctaaatattaaatgtaatgcacacattccaataattaatttctatatttgatttattaacttgtgccttaagggcacaagttagcatttca 48047040  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 40019820 - 40019917
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg-tcatattaacttgtg-tcttaagggcacaaattaacattt 99  Q
    |||||||||||||| |||||||| ||||||||||||||||||| || ||| |||||||| ||  ||||||||||| | || ||||||||| |||||||||    
T  40019820 attaaaaagttaaatattaaatgcaatgcacacatttcaataagttttttctatatttgatc--attaacttgtgcttttgagggcacaagttaacattt 40019917  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 48633981 - 48634068
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaa 89  Q
    |||||||||||||||| ||||   |||| ||||||| ||||||| ||||| |||||||    ||||||||||||||||||||||||||    
T  48633981 attaaaaagttaaagactaaagacaatgtacacattccaataaactatttttatattttatttattaacttgtgtcttaagggcacaa 48634068  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 42306573 - 42306621
Alignment:
Q  11 ttaaagattaaatggaatgcacacatttcaataaattatttatatattt 59  Q
    |||||||||||||| ||||||| |||||||||||||||||| |||||||    
T  42306573 ttaaagattaaatgcaatgcacgcatttcaataaattatttctatattt 42306621  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 20009715 - 20009769
Alignment:
Q  5 aaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    ||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||    
T  20009715 aaaaagttacagattaaatgtaatg-acacatttcaataaattatttctatatttg 20009769  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 43951939 - 43952037
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||  ||||| |||||||  |||||||||||| ||||| ||||||| || ||||||| | | ||||||||||||||   ||||| ||||||||||    
T  43951939 attaaaatattaaatattaaatttaatgcacacattccaatacattatttctacatttgtcttctaaacttgtgtcttaaaatcacaagttaacatttc 43952037  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 45671787 - 45671845
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    |||||||||||||| | |||||| ||| |||| |||||||||| |||||| ||||||||    
T  45671787 attaaaaagttaaataataaatgcaatacacatatttcaataagttatttctatatttg 45671845  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 3398900 - 3398976
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtctt 79  Q
    |||||||||||||| |||||||  ||| |||||| | ||||||| ||||| ||||||||   ||||||||||||||||    
T  3398900 attaaaaagttaaa-attaaatttaatacacacaatgcaataaactatttttatatttgatttattaacttgtgtctt 3398976  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 39983126 - 39983054
Alignment:
Q  8 aagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcat-attaacttgtgtctta 80  Q
    |||||||||||||||| |||| ||| ||||  |||||||||||| ||||||| | || ||||||||||||||||    
T  39983126 aagttaaagattaaatagaatacacgcattctaataaattatttctatattt-taatcattaacttgtgtctta 39983054  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 43251934 - 43251991
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatattt 59  Q
    |||||||| |||||||||||||| ||  ||||||||  |||||||||||| |||||||    
T  43251934 attaaaaaattaaagattaaatgtaaaacacacattctaataaattatttctatattt 43251991  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 17354438 - 17354394
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaat 46  Q
    |||||||||||||||||||||||  |||| |||||| ||||||||    
T  17354438 attaaaaagttaaagattaaatgatatgcccacattccaataaat 17354394  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4989280 - 4989339
Alignment:
Q  1 tattaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    |||||||||| ||||||||||||| ||| |||||||| ||||||||||||| ||||||||    
T  4989280 tattaaaaagctaaagattaaatgtaatacacacattacaataaattatttctatatttg 4989339  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 39108599 - 39108657
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttg 60  Q
    |||||||| |||||| ||||||| |||||||||||| ||||||||||||| ||||||||    
T  39108599 attaaaaaattaaagtttaaatgcaatgcacacattccaataaattatttttatatttg 39108657  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 36434739 - 36434658
Alignment:
Q  5 aaaaagttaaagattaaa-tggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggc 85  Q
    ||||||| |||||||||| || |||||||||||||||||||||||||| ||||||||    |||||| |||| |||||||||    
T  36434739 aaaaagtgaaagattaaaatgcaatgcacacatttcaataaattatttttatatttgaatcattaacatgtgccttaagggc 36434658  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 95
Target Start/End: Complemental strand, 40740763 - 40740670
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaac 95  Q
    ||||||||||||||||||||||| |||| |||||||  |||||| || || ||||||||     ||||||||| |||||||||||||| |||||    
T  40740763 attaaaaagttaaagattaaatgtaatgtacacattctaataaactacttctatatttgattctttaacttgtatcttaagggcacaagttaac 40740670  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 4993293 - 4993389
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    ||||||||||||||||||||||| ||| |||| |||  |||  ||||||| ||||||||    |||||||| || |||||| |||||||||||||||||    
T  4993293 attaaaaagttaaagattaaatgcaatacacatattcaaat--attatttctatatttgaatcattaacttatgccttaagagcacaaattaacatttc 4993389  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 35879028 - 35878953
Alignment:
Q  6 aaaagttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaa 81  Q
    ||||||||||||||||||  |||||||| |||||||||| | ||| |||||||||   ||||||||||||| ||||    
T  35879028 aaaagttaaagattaaatttaatgcacatatttcaataactcattcatatatttgatttattaacttgtgttttaa 35878953  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 6108794 - 6108728
Alignment:
Q  34 catttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||| ||||||| |||||||| | | | ||||||||| |||||||||||| ||||||||||    
T  6108794 catttcaatacattatttctatatttgccttctaaacttgtgttttaagggcacaagttaacatttc 6108728  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 5957059 - 5957108
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattattt 51  Q
    ||||||||||||||||||| ||| ||||| |||||| |||||||||||||    
T  5957059 attaaaaagttaaagattatatgaaatgcgcacattccaataaattattt 5957108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 10361187 - 10361286
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattattt-atatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||| |||||||| ||| |||||| | |||||  || ||| |||||||||    ||||||||||| ||| ||||||||| ||||||||||    
T  10361187 attaaaaagttaaatattaaatgcaatacacacaatccaatatgtttttttatatatttgaatcattaacttgtgccttgagggcacaagttaacatttc 10361286  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 11008065 - 11008110
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaatt 47  Q
    |||||||||| ||| |||||||  ||||||||||||||||||||||    
T  11008065 attaaaaagtgaaatattaaattcaatgcacacatttcaataaatt 11008110  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 38666436 - 38666347
Alignment:
Q  11 ttaaagattaaatggaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 100  Q
    |||||||||||||  |||||||  ||| ||||| ||||||| || ||||| | | | |||||||| ||||||| ||||| ||||||||||    
T  38666436 ttaaagattaaatttaatgcacgtattccaatacattatttttacatttgacttttaaacttgtgccttaaggacacaagttaacatttc 38666347  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 44976177 - 44976228
Alignment:
Q  4 taaaaagttaaagattaaatggaatgcacacatttcaataaattatttatata 56  Q
    |||||| |||||||||||||  ||||||||| |||||||||||||||| ||||    
T  44976177 taaaaaattaaagattaaatt-aatgcacacttttcaataaattatttttata 44976228  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 16900 - 16852
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattatt 50  Q
    |||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  16900 attaaaaagttaaatattaaatgcaatgcacacatttgaataaattatt 16852  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 37802 - 37844
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataa 44  Q
    ||||||||||||||||||||||   ||||||||||||||||||    
T  37802 attaaaaagttaaagattaaatatgatgcacacatttcaataa 37844  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 176325 - 176358
Alignment:
Q  66 ttaacttgtgtcttaagggcacaaattaacattt 99  Q
    ||||||||||||||||||| ||||||||||||||    
T  176325 ttaacttgtgtcttaagggtacaaattaacattt 176358  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 50663 - 50712
Alignment:
Q  2 attaaaaagttaaagattaaatggaatgcacacatttcaataaattattt 51  Q
    |||||||| ||| |||||||||  |||||||||||| |||||||||||||    
T  50663 attaaaaacttagagattaaatacaatgcacacattccaataaattattt 50712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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