View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_high_8 (Length: 570)
Name: NF4850_high_8
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 16 - 552
Target Start/End: Original strand, 8691078 - 8691614
Alignment:
| Q |
16 |
cactgacaatgttattgggataaagaaaacacttgtgttctataatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgcc |
115 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691078 |
cactgacaatgttattgggataaaaaaaacacttgtgttctataatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgcc |
8691177 |
T |
|
| Q |
116 |
acctttcatgataaccaggtttgttttgttacaacaatgtttaaacttttaactttgaaataagtatggtatgagttttttcagnnnnnnntgttgatta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8691178 |
acctttcatgataaccaggtttgttttgttacaacaatgtttaaacttttaactttgaaataagtatggtatgagttttttcagaaaaaaatgttgatta |
8691277 |
T |
|
| Q |
216 |
tcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgtgatgaag |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691278 |
tcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgtgatgaag |
8691377 |
T |
|
| Q |
316 |
gggagcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaa |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691378 |
gggagcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaa |
8691477 |
T |
|
| Q |
416 |
ttttgaaaacaaagttttaattttaaacctttcttacatgaaacatacttagaagttagaacttagacttgtttgttatttgtttcaggtaataagtggt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691478 |
ttttgaaaacaaagttttaattttaaacctttcttacatgaaacatacttagaagttagaacttagacttgtttgttatttgtttcaggtaataagtggt |
8691577 |
T |
|
| Q |
516 |
accttgcttgaaaagaatatggaaccaatgtttcagg |
552 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8691578 |
accttgcttgaaaagaatatggaaccaatgtttcagg |
8691614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 219 - 461
Target Start/End: Original strand, 8705944 - 8706184
Alignment:
| Q |
219 |
tccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgtgatgaagggg |
318 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| | ||| ||||||||||| |
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| T |
8705944 |
tccaaaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaaaaagctgaaaaggaagctgaagcagatatacatgatgaagggg |
8706043 |
T |
|
| Q |
319 |
agcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgacaatagaaattt |
418 |
Q |
| |
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|||| ||| ||||||||||||| || || |||| |||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
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| T |
8706044 |
agccaagtagacacatgagttctgaccatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttgataaatga-tatagaaattt |
8706142 |
T |
|
| Q |
419 |
tgaaaacaaagttttaattttaaacctttcttacatgaaacat |
461 |
Q |
| |
|
||| ||||||||||| ||||| |||||| |||||||||||| |
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|
| T |
8706143 |
tgagaacaaagttttggatttaagcctttc-tacatgaaacat |
8706184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 223 - 401
Target Start/End: Original strand, 8744567 - 8744745
Alignment:
| Q |
223 |
aaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgtgatgaaggggagcc |
322 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||| ||||||| | |
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| T |
8744567 |
aaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaaaatactgaagaggaattggatacaatgatatgtgatgtaggggagtc |
8744666 |
T |
|
| Q |
323 |
tagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgata |
401 |
Q |
| |
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||| |||||||||| || | ||||||||||||||||| | ||||||||| | ||||||| | ||||| ||||||| |
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| T |
8744667 |
aagtagacacatgagctctcactacgaaaatcaagaaacattagaaggaatttcaaatgtaagaagttcatccttgata |
8744745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 207 - 325
Target Start/End: Original strand, 8723260 - 8723378
Alignment:
| Q |
207 |
tgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatat |
306 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||| |||||||||| ||||| |||||| | |
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| T |
8723260 |
tgttgattacgctccaaaattttgtagaggacttttgttttatgtcgcttgatgaaaaaagccgagataaaaggcgaagaggaaaatgatacaatgatgt |
8723359 |
T |
|
| Q |
307 |
gtgatgaaggggagcctag |
325 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
8723360 |
gtgatgaaggggagcctag |
8723378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 207 - 401
Target Start/End: Original strand, 8724711 - 8724904
Alignment:
| Q |
207 |
tgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatat |
306 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||||| | |||||||| | |||| |||||||| |
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|
| T |
8724711 |
tgttgattatcatccaaa-ttttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaaaataccgaagaggagctggatacaatgatat |
8724809 |
T |
|
| Q |
307 |
gtgatgaaggggagcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgata |
401 |
Q |
| |
|
|||| ||||||||| | ||| ||||||||||||| | ||||||| |||||||||| | |||||||| | |||||||| | ||||| ||||||| |
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|
| T |
8724810 |
gtgacgaaggggagtcgagtagacacatgagttcttactacgaaaaccaagaaacagctcaaggaatttcagatgtaagcagttcatccttgata |
8724904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 27 - 149
Target Start/End: Complemental strand, 14372358 - 14372237
Alignment:
| Q |
27 |
ttattgggataaagaaaacacttgtgttctataatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatga |
126 |
Q |
| |
|
|||||||||| |||||||| ||||| | |||||||||| ||||||||||||||||||||| | |||||||||||||||||||| | |||||||| | || |
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|
| T |
14372358 |
ttattgggattaagaaaactcttgtttactataatggtcgtgttcctggtgttaaaagcagccgggtgattcatgaatatcatgataccacctttgaaga |
14372259 |
T |
|
| Q |
127 |
taaccaggtttgttttgttacaa |
149 |
Q |
| |
|
| ||||||||||||||||||||| |
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|
| T |
14372258 |
t-accaggtttgttttgttacaa |
14372237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 8705369 - 8705491
Alignment:
| Q |
27 |
ttattgggataaagaaaacacttgtgttctataatggttgtgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatga |
126 |
Q |
| |
|
|||||||||| ||||| || ||||| | ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||| | || |
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|
| T |
8705369 |
ttattgggattaagaagactcttgtttactacaatggtcgtgttcctggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaaga |
8705468 |
T |
|
| Q |
127 |
taaccaggtttgttttgttacaa |
149 |
Q |
| |
|
| || |||||||||||||||||| |
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|
| T |
8705469 |
tgacaaggtttgttttgttacaa |
8705491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 14372018 - 14371953
Alignment:
| Q |
210 |
tgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaa |
275 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
14372018 |
tgattatcatccgaaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaa |
14371953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 209 - 320
Target Start/End: Original strand, 8739912 - 8740023
Alignment:
| Q |
209 |
ttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatgatatgt |
308 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| || |||| |||||| || || || |||||||||| ||||||||||| | ||| |||| | ||| |
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|
| T |
8739912 |
ttgattaccctccaaaattttgtagaggactcatgtcttatgtcacttgattaaaaatgccgagaaaaaaggtgaagaggaaaattatacaatggtgtgt |
8740011 |
T |
|
| Q |
309 |
gatgaaggggag |
320 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8740012 |
gatgaaggggag |
8740023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 8740485 - 8740563
Alignment:
| Q |
67 |
tgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgtt |
145 |
Q |
| |
|
||||||||||||||| | || ||| | ||||||||||||||| ||||| |||| ||||| |||||||||||| |||| |
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|
| T |
8740485 |
tgttcctggtgttaagactaattggatcattcatgaatatcatgatgccatctttgatgatcaccaggtttgttatgtt |
8740563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 8723844 - 8723944
Alignment:
| Q |
67 |
tgttcctggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttacaacaatgtttaaactttta |
166 |
Q |
| |
|
||||||||||||||| | ||| ||| | |||||||| |||||| || |||||| | ||| ||||||||||||||||||| || |||| |||||||| |
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|
| T |
8723844 |
tgttcctggtgttaagaccaattggatcattcatgagtatcatgatgtcaccttagaggattcccaggtttgttttgttacattaaggttttaactttta |
8723943 |
T |
|
| Q |
167 |
a |
167 |
Q |
| |
|
| |
|
|
| T |
8723944 |
a |
8723944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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