View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_11 (Length: 510)
Name: NF4850_low_11
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 3185540 - 3185999
Alignment:
| Q |
18 |
catatcacaactatggcctgctagtgatagtgaaatctcgaaagctaaaagtttttgaaccaaaatcactaaagttcctaactaagttaagttccaaaat |
117 |
Q |
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| T |
3185540 |
catatcacaactatggcctgctagtgatagtgaaatctcgaaagctaaaagtttttgaaccaaaaacactaaagttcctaactaagttaagttccaaaat |
3185639 |
T |
|
| Q |
118 |
tggtttattttgctcttccacagaaataaaagaagacatgtttattatacacatgcaaggtgtggaaaatgaagtatggttgaatttaagtnnnnnnnnt |
217 |
Q |
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| T |
3185640 |
tggtttattttgctcttccacaaaaataaaagaagacatgtttattatacacatgcaaggtgtggcaaatgaagtatggatgaatttaagtaaaaaaaat |
3185739 |
T |
|
| Q |
218 |
aagtatatcgtgaaagttatagagccaaagtcattaagttcttaagtaaggtaagctcataattaagttggttaatttttcacttttgaataaacaaaag |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3185740 |
aagtatatggtgaaagttatagagccaaagtcattaagttcttaagtaaggtaagctcataattaagttggttaatttttcacttttgaataaacaaaag |
3185839 |
T |
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| Q |
318 |
acagccatgtatatataaatatgcaaggagatggaaataaagtaaggttgaagttaagtaacaaaaaataataattttatgatgatgttctcaattggct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3185840 |
acagccatgtatatataaatatgcaaggagatggaaataaagtaaggttgaagttaagtaacaaaaaataataattttatgacgatgttctcaattggct |
3185939 |
T |
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| Q |
418 |
tttagctctagtttataataaaattagttagcatataactaatttgtggttaaatgttaa |
477 |
Q |
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| T |
3185940 |
tttagctctagtttataataaaattagttagcatataactaatttgtggttaaatgttaa |
3185999 |
T |
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