View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_14 (Length: 492)
Name: NF4850_low_14
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 78 - 477
Target Start/End: Complemental strand, 55912011 - 55911612
Alignment:
| Q |
78 |
tgattgaacagtctacataaaacacttgcatagaatgcttaaatagtccactacaaatctacaatggtattgccactaatattgccgtgaagatatgaat |
177 |
Q |
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| T |
55912011 |
tgattgaacagtctacataaaacacttgcatagaatgcttaaatagtccactacaaatctacaatggtattgccactaatattgccgtgaagatatgaat |
55911912 |
T |
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| Q |
178 |
gatcatgtttcatagaaaaataaaatatgaacaagtgtaaccttcaccaacaagccatcgtttactctataaaatctcaaaccaacaagtagcattagta |
277 |
Q |
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| T |
55911911 |
gatcatgtttcatagaaaaataaaatatgaacaagtgtaaccttcaccaacaagccatcgtttactcaataaaatctcaaaccaacaagtagcattagta |
55911812 |
T |
|
| Q |
278 |
tcaaaaactacaaattcagcaattcaaacaggaataaatgccaatcatgttgaactgagtcacttcattcatcatacagaagccttgcatatactactca |
377 |
Q |
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| T |
55911811 |
tcaaaaactacaaattcagcaattcaaacaggaataaatgccaatcatgttgaactgagtcacttcattcatcatacagaagccttgcatatactactca |
55911712 |
T |
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| Q |
378 |
ggacagaaattcatggttgaatccaatcagtgtaagcttcatagctgcaattacttggcctgaagcagcactaccaccaaatacatctgggctacttgct |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55911711 |
ggacagaaattcatggttgaatccaatcagtgtaagcttcatagctgcaattacttggcctgaagcagcactaccaccaaatacatctgggctacttgct |
55911612 |
T |
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