View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_15 (Length: 477)
Name: NF4850_low_15
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 30524072 - 30524512
Alignment:
| Q |
12 |
atcatcacacaaggacaacctaaaatgtgagacttgaacatagcaccatacctataattcaaaaacaaaatcaacaataataattagtataaatatcact |
111 |
Q |
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| T |
30524072 |
atcatcacacaaggacaacctaaaatgtgagacttgaacatagcaccatacctataattcaaaaacaaaatcaacaataataattagtatatatatcact |
30524171 |
T |
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| Q |
112 |
taatgagctaatctagtatgtaagtacaactcagatgataaatagttgcagggacatttgatatcatggggtgcagggttgaacccgcaattccctattt |
211 |
Q |
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| T |
30524172 |
taatgagctaatctagtctgtaagtacaactcagatgataaatagttgcagggacatttgatat--------gcagggttgaacccgtaattccctattt |
30524263 |
T |
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| Q |
212 |
ctcatcaaactaagtatgcgcgagtttcgctgctaggctctttgaagnnnnnnnnnnnnnnnnnnnnn-gagtgagtttgaaccttttgattttgttggc |
310 |
Q |
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| T |
30524264 |
ctcatcatactaattatgcgcgagtttcgctgctaggctctttgaagaaaaaagaaaagaaacaaaaaagagtgaatttgaaccttttgattttgttggc |
30524363 |
T |
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| Q |
311 |
aaagaaaagactagggtcttgagaatacatttgaaaggtttctcctatgtaagggtaacccatagaaccaggaggtagaggcaattgttttccattagaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30524364 |
aaagaaaagactagggtcttgagaatacatttgaaaggtttctcctatgtaagggtaacccatagaaccaggaggtagaggcaattgttttccattagaa |
30524463 |
T |
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| Q |
411 |
ggaaataagaagtttttgatgagtgatttgaacagaacaatgaagagaa |
459 |
Q |
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| T |
30524464 |
ggaaataagaagtttttgatgagtgatttgaacagaacaatgaagagaa |
30524512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 382
Target Start/End: Complemental strand, 10422765 - 10422675
Alignment:
| Q |
292 |
accttttgattttgttggcaaagaaaagactagggtcttgagaatacatttgaaaggtttctcctatgtaagggtaacccatagaaccagg |
382 |
Q |
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| T |
10422765 |
accttttgatttttgatgcaaagaagacattagggtcttgagaataaagttgaaaagtttctcctatgtaaggccaacccattgaaccagg |
10422675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 10422917 - 10422864
Alignment:
| Q |
12 |
atcatcacacaaggacaacctaaaatgtgagacttgaacatagcaccataccta |
65 |
Q |
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| T |
10422917 |
atcatcacacatggacatcccaaaatgtgagacttgaacatagaaccataccta |
10422864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 40094735 - 40094662
Alignment:
| Q |
131 |
gtaagtacaactcagatgataaatagttgcagggacatttgatatcatggggtgcagggttgaacccgcaattc |
204 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||| ||| ||||| |||||||| |||||| |
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| T |
40094735 |
gtaagtacaactcagatggtaaaattttgcagggacatttgatatgttggaacgcaggtttgaacccacaattc |
40094662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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