View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_16 (Length: 471)
Name: NF4850_low_16
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 51811843 - 51811575
Alignment:
| Q |
16 |
gagagagtgtgaagttggaacggagtttgaggcggcgatgacggtgggaagagtggtggttgttgaagggagagtgtgaagagaggaaaaagagaacaat |
115 |
Q |
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| T |
51811843 |
gagagagtgtgaagttggaacggagtttgaggcggcgatgacggtgggaagagtggtgattgttgaagggagagtgtgaagagaggaaaaagagaacaat |
51811744 |
T |
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| Q |
116 |
tagggctaagatcgtgtatatcaataccgaccctaaacccattgcatttccagattcaaagaaaataataatagattggatagatctctctctagtatag |
215 |
Q |
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| T |
51811743 |
tagggctaagatcgtgtatatcaataccgaccctaaacccattgcatttccagattcaaagaaaataataatagattagatagatctctctctagtatag |
51811644 |
T |
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| Q |
216 |
ttgtgtaatttcctttcaattcaactcaccttcaatcatatgcatcaaagagatctcttgcatctatagtcc |
287 |
Q |
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| T |
51811643 |
ttgtgtaatttcctttcaattcaactcacattcaatcatat---tcagagagatctcttgcatctatagtcc |
51811575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 461
Target Start/End: Complemental strand, 51811457 - 51811415
Alignment:
| Q |
420 |
aattggaaagacctaaataagagtcgacaaa-ccaacattcat |
461 |
Q |
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| T |
51811457 |
aattggaaaaacctaaataagagtcgacaaacccaacattcat |
51811415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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