View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_19 (Length: 433)
Name: NF4850_low_19
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 419
Target Start/End: Original strand, 7346615 - 7347011
Alignment:
| Q |
20 |
aggcactaaaatatcaaccgtactacctcatcccgtcagaaattgaactttgatttactcacattacatgagtctagtttcatatgataaaaccattgcg |
119 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346615 |
aggcactaaaatatcagtcgtactgcctcatcccgtcagaaattgaactttgatttactcacattacatgagtctagtttcatatgataaaaccattgcg |
7346714 |
T |
|
| Q |
120 |
aagatctttttaatagtaacaaattacattcgattaagaatcaactaatttgatcacatgtgaagttactacatagataatgaaaaaagattctctcaat |
219 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346715 |
aagatctttttaatagtaacaaattacattcgattaaaaatcaactagtttgatcacatgtgaagttactacatagataatgaaaaaagattctctcaat |
7346814 |
T |
|
| Q |
220 |
attttctctcatgtttatgtggtataaatcttaccgttgaaccttttcacttaatatttatatcaagacttaaacatctttttggtcccttatctttatt |
319 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346815 |
attttcactcatgtctatgtggtataaatcttaccgttgaaccttttcactcaatatttatatcaagacttaaacatctttttggtcccttatctttatt |
7346914 |
T |
|
| Q |
320 |
ttagagttcatattggccccttatttaataaaatnnnnnnnnnnnggtgtagatacgtcctttttatttgtttaatcggtaccacattagtccttctcat |
419 |
Q |
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|||||||||||||||| |||||||| || |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7346915 |
ttagagttcatattggtcccttattaaaaaaaa---aaaaaaaaaagtgtaaatacgtcctttttatttttttaatcggtaccacattagtccttctcat |
7347011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 344
Target Start/End: Original strand, 7346266 - 7346590
Alignment:
| Q |
20 |
aggcactaaaatatcaaccgtactacctcatcccgtcagaaattgaactttgatttactcacattacatgagtctagtttcatatgataaaaccattgcg |
119 |
Q |
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|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346266 |
aggcactaaaatatcagtcgtactacctcatcccgtcagaaattgaactttgatttactcacattacatgagtctagtttcatatgataaaaccattgcg |
7346365 |
T |
|
| Q |
120 |
aagatctttttaatagtaacaaattacattcgattaagaatcaactaatttgatcacatgtgaagttactacatagataatgaaaaaagattctctcaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346366 |
aagatctttttaatagtaacaaattacattcgattaagaatcaactaatttgatcacatgtgaagttactacatagataatgaaaaaagattctctcaat |
7346465 |
T |
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| Q |
220 |
attttctctcatgtttatgtggtataaatcttaccgttgaaccttttcacttaatatttatatcaagacttaaacatctttttggtcccttatctttatt |
319 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7346466 |
attttctctcatgtctatgtggtataaatcttaccgttgaaccttttcactcaatatttatatcaagacttaaacatctttttggtcccttatctttatt |
7346565 |
T |
|
| Q |
320 |
ttagagttcatattggccccttatt |
344 |
Q |
| |
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||||||||||||||| |||||||| |
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| T |
7346566 |
ttagagttcatattgatcccttatt |
7346590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 29529687 - 29529628
Alignment:
| Q |
288 |
cttaaacatctttttggtcccttatctttattttagagttcatattggccccttatttaa |
347 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| | ||||||||||| ||||||||||| |
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| T |
29529687 |
cttaaacacctttttggtcccttatctttattttggtgttcatattggtcccttatttaa |
29529628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 29529050 - 29529106
Alignment:
| Q |
288 |
cttaaacatctttttggtcccttatctttattttagagttcatattggccccttatt |
344 |
Q |
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|||||||| |||||||||||||||||||||||| | |||||||||| |||||||| |
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| T |
29529050 |
cttaaacacctttttggtcccttatctttatttcgggattcatattggtcccttatt |
29529106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 41186745 - 41186804
Alignment:
| Q |
287 |
acttaaacatctttttggtcccttatctttattttagagttcatattggccccttatttaa |
347 |
Q |
| |
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||||||||| |||||| |||||||||||||| | |||||||||||||| ||||||||||| |
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| T |
41186745 |
acttaaacacctttttt-tcccttatctttatatcagagttcatattggtcccttatttaa |
41186804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 995411 - 995344
Alignment:
| Q |
277 |
ttatatcaagacttaaacatctttttggtcccttatctttattttagagttcatattggccccttatt |
344 |
Q |
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|||||| | |||||||| ||||||||||||| |||| |||||||| | ||||||||||| ||||||| |
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| T |
995411 |
ttatatgatgacttaaatatctttttggtcctttatttttattttggggttcatattggttccttatt |
995344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 320
Target Start/End: Complemental strand, 9590044 - 9590016
Alignment:
| Q |
292 |
aacatctttttggtcccttatctttattt |
320 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
9590044 |
aacatctttttggtcccttatctttattt |
9590016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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