View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4850_low_2 (Length: 843)

Name: NF4850_low_2
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4850_low_2
NF4850_low_2
[»] chr5 (5 HSPs)
chr5 (173-734)||(35508735-35509297)
chr5 (14-153)||(35509294-35509433)
chr5 (440-499)||(35522705-35522764)
chr5 (281-323)||(39153939-39153981)
chr5 (445-491)||(35552286-35552332)
[»] chr3 (4 HSPs)
chr3 (443-515)||(31653340-31653412)
chr3 (445-514)||(31703685-31703754)
chr3 (446-491)||(31710084-31710129)
chr3 (446-491)||(31011207-31011252)
[»] chr4 (2 HSPs)
chr4 (353-417)||(48362736-48362800)
chr4 (281-323)||(48362821-48362863)
[»] chr2 (1 HSPs)
chr2 (13-46)||(28183764-28183797)


Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 173 - 734
Target Start/End: Complemental strand, 35509297 - 35508735
Alignment:
Q  173 catgctgacatgcatactagattgctccacatcagaaaacagctgaatgatgtgactcaggtttcaaaaagctcccactattattccatttccatgaaaa 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35509297 catgctgacatgcatactagattgctccacatcagaaaacagctgaatgatgtgactcaggtttcaaaaagctcccactatcattccatttccatgaaaa 35509198  T
Q  273 gaaacaccactttctaacaacattttcaatttttactctatatgtgggtggtcaaaccaaaa-tgacattttgctacaaattttcctttttaattgtgat 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  35509197 gaaacaccactttctaacaacattttcaatttttactctatatgtgggtggtcaaaccaaaaatgacattttgttacaaattttcctttttaattgtgat 35509098  T
Q  372 agagagaaaatgaaagctaatttgaaagaaagcatttccgaaaacatcgaaagcaggttggtgacagttccctaacctgcatattgaatgcaaccatctg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35509097 agagagaaaatgaaagctaatttgaaagaaagcatttccgaaaacatcgaaagcaggttggtgacagttccctaacctgcatattgaatgcaaccatctg 35508998  T
Q  472 agctccatacatccacccaagatgtggcttgaaatttgtggatttgacgcgtgtcgccctagggtacaccctgagtatannnnnnngtgtgaatctggaa 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  35508997 agctccatacatccacccaagatgtggcttgaaatttgtggatttgacgcgtgtcgccctagggtacaccctgagtatatttttttgtgtgaatctggaa 35508898  T
Q  572 gactaacagtttgaatcagataaaccatgggagactgttaggtactaaaatttgattatagtgtgctattgtatcacatacctaatgatgtctgttccat 671  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  35508897 gagtaacagtttgaatcagataaaccataggagactgttaggtactaaaatttgattatagcgtgctcttgtatcacatacctaatgatgtctgttccat 35508798  T
Q  672 gagattctgaagccttttctaaggttgtttcgctccaacttaagcgtctaagttcaccgtcag 734  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35508797 gagattctgaagccttttctaaggttgtttcgctccaacttaagcgtctaagttcaccgtcag 35508735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 35509433 - 35509294
Alignment:
Q  14 cagacaccaataataatttgaaaaagtagaagtaattgaatgggagtacaccatgtgttgatgttatacaccgacacgccttcaatctaaagtgtcactg 113  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35509433 cagacaccgataataatttgaaaaagtagaagtcattgaatgggagtacaccatgtgttgatgttatacaccgacgcgccttcaatctaaagtgtcactg 35509334  T
Q  114 ccacattattcaccaatctcttggtagcaaaaatttcatg 153  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  35509333 ccacattattcaccaatctcttggtagcaaaaatttcatg 35509294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 35522764 - 35522705
Alignment:
Q  440 tccctaacctgcatattgaatgcaaccatctgagctccatacatccacccaagatgtggc 499  Q
    ||||| |||||||| || ||||| |||||||||||||||||||||||||| | |||||||    
T  35522764 tccctgacctgcatgttaaatgcgaccatctgagctccatacatccaccctatatgtggc 35522705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 39153981 - 39153939
Alignment:
Q  281 actttctaacaacattttcaatttttactctatatgtgggtgg 323  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  39153981 actttctaacaatattttcaatttttactttatatgtgggtgg 39153939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 445 - 491
Target Start/End: Complemental strand, 35552332 - 35552286
Alignment:
Q  445 aacctgcatattgaatgcaaccatctgagctccatacatccacccaa 491  Q
    ||||||||| |||||||||||||| ||||||||||  ||||||||||    
T  35552332 aacctgcatgttgaatgcaaccatttgagctccatgaatccacccaa 35552286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 443 - 515
Target Start/End: Complemental strand, 31653412 - 31653340
Alignment:
Q  443 ctaacctgcatattgaatgcaaccatctgagctccatacatccacccaagatgtggcttgaaatttgtggatt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||    
T  31653412 ctaacctgcatattgaatgcaaccatctgagctccatacatccaccctaaatgtggcctaaaatttgtggatt 31653340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 31703754 - 31703685
Alignment:
Q  445 aacctgcatattgaatgcaaccatctgagctccatacatccacccaagatgtggcttgaaatttgtggat 514  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| | | ||||| | ||||||| ||||    
T  31703754 aacctgcatattgcatgcaaccatctgagctccatacatccaccctaaaagtggcctaaaatttgaggat 31703685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 31710129 - 31710084
Alignment:
Q  446 acctgcatattgaatgcaaccatctgagctccatacatccacccaa 491  Q
    |||||||| || |||||||||||||||||||||| |||||||||||    
T  31710129 acctgcatgttaaatgcaaccatctgagctccatgcatccacccaa 31710084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 31011207 - 31011252
Alignment:
Q  446 acctgcatattgaatgcaaccatctgagctccatacatccacccaa 491  Q
    |||||||| || |||||||||||||||||||||| |||||| ||||    
T  31011207 acctgcatgttaaatgcaaccatctgagctccatgcatccaaccaa 31011252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 353 - 417
Target Start/End: Complemental strand, 48362800 - 48362736
Alignment:
Q  353 tttcctttttaattgtgatagagagaaaatgaaagctaatttgaaagaaagcatttccgaaaaca 417  Q
    |||||| |||||||||||||||||||| ||| ||||||| | || |||| ||||||| |||||||    
T  48362800 tttcctctttaattgtgatagagagaagatggaagctaactagagagaatgcatttctgaaaaca 48362736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 48362863 - 48362821
Alignment:
Q  281 actttctaacaacattttcaatttttactctatatgtgggtgg 323  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||    
T  48362863 actttctaacaacattttcaattttcactttataggtgggtgg 48362821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 28183764 - 28183797
Alignment:
Q  13 acagacaccaataataatttgaaaaagtagaagt 46  Q
    |||||||||||||||||||||| |||||||||||    
T  28183764 acagacaccaataataatttgataaagtagaagt 28183797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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