View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_22 (Length: 401)
Name: NF4850_low_22
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 32653048 - 32652846
Alignment:
| Q |
11 |
attctggtaatgaattgacaaaggagatacattgattgaaattaggaaattggttttcagtggagacgacaagatggtgaagcaaatcgagaattggttt |
110 |
Q |
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| T |
32653048 |
attctggtaatgaattgacaaaggagatagagtgattggaattaggaaattggttttcagtggagacgacaagatggtgaggcaaatcgagaatttgttt |
32652949 |
T |
|
| Q |
111 |
aaattttaatctgaaccgtggaaattataattagcacgtgtcatgcatctgcgatactaactgagaaactggataggttgggtaatggagcagatccgga |
210 |
Q |
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| T |
32652948 |
aaattttaatctgaaccgtggaaattataattagcacgtgtcatgcatctgcgatactaactgggaaactggacaggttgggtaatggagcagatccgga |
32652849 |
T |
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| Q |
211 |
ctc |
213 |
Q |
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||| |
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| T |
32652848 |
ctc |
32652846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 214 - 386
Target Start/End: Original strand, 20278426 - 20278597
Alignment:
| Q |
214 |
ccctaaaacattttaactttgaacgaagtataccactaatacaggtgtaacaccactatcatacaaatctcatttgaattataaaaatgttaaacattac |
313 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||| ||||||||| ||||| |
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| T |
20278426 |
ccctaaaacattttaa-tttgaacgaagtataccactaatacaggtgtaacaccactataatacaaatctagattaaattataacaatgttaaatattac |
20278524 |
T |
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| Q |
314 |
gataatataaatgtggtctctgaaacttatttggtaaaaaccacctcgaagttaaatacttcaaaataaaaaa |
386 |
Q |
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|||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20278525 |
aataatacaaatgcggtctctcaaacttatttggtaaaaaccacctcgaagttaaatacttcaaaataaaaaa |
20278597 |
T |
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