View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4850_low_32 (Length: 306)
Name: NF4850_low_32
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 21 - 211
Target Start/End: Original strand, 52851272 - 52851462
Alignment:
| Q |
21 |
ttcttcatcatttattcatgaacaagttctcatggttagttgattatttgttctaacgtacttggttatannnnnnnaacaacttgctaatttttggtgc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52851272 |
ttcttcatcatttattcatgaacaagttctcatggttagttgattatttgttctaacgtacttggttatatttttttaacaacttgctaatttttggtgc |
52851371 |
T |
|
| Q |
121 |
aggcttattttttctgcttgctgtgtcgtatgacaatgagaaaaaccctttgtcgcacatcatgcttgatgcccaagccaacattagtaat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52851372 |
aggcttattttttctgcttgctgtgtcgtatgacaatgagaaaaaccctttgtcgcacatcatgcttgatgcccaagccaacattagtaat |
52851462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 52851504 - 52851543
Alignment:
| Q |
253 |
ttcttgtgcaaataaatctgttatggagttgttaatattg |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52851504 |
ttcttgtgcaaataaatctgttatggagttgttaatattg |
52851543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University