View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4850_low_33 (Length: 300)

Name: NF4850_low_33
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4850_low_33
NF4850_low_33
[»] chr4 (3 HSPs)
chr4 (1-146)||(7109913-7110059)
chr4 (152-230)||(5431732-5431810)
chr4 (226-280)||(5431863-5431917)
[»] chr8 (3 HSPs)
chr8 (155-230)||(11427236-11427311)
chr8 (228-280)||(11427127-11427179)
chr8 (189-230)||(32665300-32665341)
[»] chr7 (3 HSPs)
chr7 (152-230)||(44394685-44394763)
chr7 (226-280)||(44394818-44394872)
chr7 (226-261)||(39061847-39061882)
[»] chr2 (3 HSPs)
chr2 (152-230)||(5967917-5967995)
chr2 (226-280)||(5967808-5967862)
chr2 (189-230)||(6413033-6413074)
[»] chr3 (2 HSPs)
chr3 (152-230)||(26216339-26216417)
chr3 (226-280)||(26216472-26216526)
[»] chr6 (3 HSPs)
chr6 (169-230)||(16711186-16711247)
chr6 (71-136)||(6616089-6616154)
chr6 (226-261)||(18879479-18879514)
[»] chr5 (1 HSPs)
chr5 (227-270)||(10184746-10184789)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 7110059 - 7109913
Alignment:
Q  1 aattgcacatgggtaatacatgcaaagggaggttgtttgaatggacaatgtattccttggagaagcatccattaatggatgcatacaacgcttcaaagtg 100  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7110059 aattgcacatgggtaatacatgcaaatggaggctgtttgaatggacaatgtattccttggaaaagcatccattaatggatgcatacaacgcttcaaagtg 7109960  T
Q  101 gtagcaaa-taaaggggttggatgaattgggacatgcccatcctcaa 146  Q
    || | |||  |||||||||||||||||||||||||||||| ||||||    
T  7109959 gtcgaaaacaaaaggggttggatgaattgggacatgcccaccctcaa 7109913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 5431732 - 5431810
Alignment:
Q  152 tacaatacttccatgagaacaatgcaagtttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 230  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5431732 tacaatacttccatgagaacaatgcaagcttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 5431810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 5431863 - 5431917
Alignment:
Q  226 catgtggtagtcacaaattagtggtttttgacacaatccttaactattgtttatt 280  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5431863 catgtggtagtcacaaattagtggtttttgacacaattcttaactattgtttatt 5431917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 155 - 230
Target Start/End: Complemental strand, 11427311 - 11427236
Alignment:
Q  155 aatacttccatgagaacaatgcaagtttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 230  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11427311 aatacttccatgagaacaatgcaagcttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 11427236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 11427179 - 11427127
Alignment:
Q  228 tgtggtagtcacaaattagtggtttttgacacaatccttaactattgtttatt 280  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11427179 tgtgatagtcacaaattagtagtttttgacacaatccttaactattgtttatt 11427127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 32665341 - 32665300
Alignment:
Q  189 tgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 230  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  32665341 tgtgaattgaaaaggtgctctaaatcatagaaagtggcatgt 32665300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 44394685 - 44394763
Alignment:
Q  152 tacaatacttccatgagaacaatgcaagtttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 230  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44394685 tacaatatttccatgagaacaatgcaagcttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 44394763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 44394818 - 44394872
Alignment:
Q  226 catgtggtagtcacaaattagtggtttttgacacaatccttaactattgtttatt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44394818 catgtggtagtcacaaattagtggtttttgacacaatccttaactattgtttatt 44394872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 39061882 - 39061847
Alignment:
Q  226 catgtggtagtcacaaattagtggtttttgacacaa 261  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39061882 catgtggtagtcacaaattagtgatttttgacacaa 39061847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 5967995 - 5967917
Alignment:
Q  152 tacaatacttccatgagaacaatgcaagtttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 230  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5967995 tacaatacttccatgagaacaatgcaagcttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggaatgt 5967917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 5967862 - 5967808
Alignment:
Q  226 catgtggtagtcacaaattagtggtttttgacacaatccttaactattgtttatt 280  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5967862 catgtggtagtcacaaattagtgatttttgacacaatccttaactattgtttatt 5967808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 6413033 - 6413074
Alignment:
Q  189 tgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 230  Q
    |||||| |||||||||| ||||||||||||||||||||||||    
T  6413033 tgtgaattgaaaaggtgctctaaatcatagaaagtggcatgt 6413074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 26216339 - 26216417
Alignment:
Q  152 tacaatacttccatgagaacaatgcaagtttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 230  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  26216339 tacaatacttccatgagaacaatgcaagcttagattatgtgaagtaaaaaggtgttctaaatcatagaaagaggcatgt 26216417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 26216472 - 26216526
Alignment:
Q  226 catgtggtagtcacaaattagtggtttttgacacaatccttaactattgtttatt 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26216472 catgtggtagtcacaaattagtggtttttgacacaatccttaactattgtttatt 26216526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 16711247 - 16711186
Alignment:
Q  169 aacaatgcaagtttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 230  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16711247 aacaatgcaagcttagattatgtgaagtgaaaaggtgttctaaatcatagaaagtggcatgt 16711186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 6616089 - 6616154
Alignment:
Q  71 attaatggatgcatacaacgcttcaaagtggtagcaaataaaggggttggatgaattgggacatgc 136  Q
    ||||||||||||| ||||| |||||||||||| ||||| |||||||||||||||||||||| ||||    
T  6616089 attaatggatgcaaacaacacttcaaagtggtcgcaaagaaaggggttggatgaattgggagatgc 6616154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 261
Target Start/End: Original strand, 18879479 - 18879514
Alignment:
Q  226 catgtggtagtcacaaattagtggtttttgacacaa 261  Q
    ||||||||||||||||||||||| ||||||||||||    
T  18879479 catgtggtagtcacaaattagtgatttttgacacaa 18879514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 10184746 - 10184789
Alignment:
Q  227 atgtggtagtcacaaattagtggtttttgacacaatccttaact 270  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  10184746 atgtggtagtcacaaattagtggtttttgacacaaaccttaact 10184789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University