View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_36 (Length: 293)
Name: NF4850_low_36
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 4482685 - 4482412
Alignment:
| Q |
1 |
tacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgtaagcctaaataaaaatgttaattca |
100 |
Q |
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| T |
4482685 |
tacatttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgtaagcctaaataaaaatgttaattca |
4482586 |
T |
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| Q |
101 |
ctaatatatcatcctttttattaaatacaattatcataaaattcacaacaatttaaaaattaaattaattgctattcaatgatagatacaggtcacccca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4482585 |
ctaatatatcatcctttttattaaatacaattatcataaaattcacaacaatttaaaaattaaattaattgctattcaatgatagataccggtcacccca |
4482486 |
T |
|
| Q |
201 |
tcggttttcggtcggatcggttcgaccgatggacccggtttttaaaacattggtttttatgaacccactggagt |
274 |
Q |
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| T |
4482485 |
tcggttttcggtcagatcggttcgaccgatggacccggtttttaaaacattggtttttatgaactcactggagt |
4482412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 21793829 - 21793903
Alignment:
| Q |
5 |
tttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgtaagc |
79 |
Q |
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| T |
21793829 |
tttgttcttgtctacactgtcttctctgccactgatcctaagaggaacgctagggactcccatgttcctgtaagc |
21793903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 41037350 - 41037421
Alignment:
| Q |
5 |
tttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgta |
76 |
Q |
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| T |
41037350 |
tttgttcttgtctacactgttttctctgctactgatgccaagagaaatgctagagactctcatgttcctgta |
41037421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 2649476 - 2649409
Alignment:
| Q |
5 |
tttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcc |
72 |
Q |
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| T |
2649476 |
tttgttcttgtctacactgtcttctctgccactgatgccaagagaaatgcaagagactctcacgttcc |
2649409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 40835193 - 40835126
Alignment:
| Q |
5 |
tttgttcttgtttacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcc |
72 |
Q |
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||||||||||||||||| || |||||||| || ||| |||| |||||||| |||||||| |||||||| |
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| T |
40835193 |
tttgttcttgtttacaccgtgttctctgccacagatcccaaaagaaatgctagagactctcatgttcc |
40835126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 40207116 - 40207055
Alignment:
| Q |
17 |
tacactgtcttctctgctactgatgccaagagaaatgcaagagactcccatgttcctgtaag |
78 |
Q |
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|||||||| ||||||||||||||| | ||||||| ||| || || ||||||||||||||||| |
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| T |
40207116 |
tacactgttttctctgctactgatcctaagagaagtgctagggattcccatgttcctgtaag |
40207055 |
T |
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