View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_48 (Length: 262)
Name: NF4850_low_48
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 18871082 - 18870842
Alignment:
| Q |
1 |
aatcacaagctatcatacatgtgactttagaagtagttatcattaaggtcaaacacgtttaatgatctgacaattacgattgaatgacgttgtaaaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
18871082 |
aatcacaagctatcatacatgtgactttagaagtagttatcattaaggtcaaacgtgtttaatgatctgacaattacgattgaatgacggagtaaaaatc |
18870983 |
T |
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| Q |
101 |
tttacgcttacagttctttgagaagtagacagatattttaatccaatcaagacataaatttgtatataccttaaagaattggtgttgaggacgcgaaagc |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18870982 |
tttacgcttacatttctttgagaagtagacagatattttaatccaatcaagacattaatttgtatataccttaaagaattggtgttgaggacgcgaaagc |
18870883 |
T |
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| Q |
201 |
actggcttgccattgtaagcgtgtataagtttcctctctgc |
241 |
Q |
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| T |
18870882 |
actggcttgccattgtaagcgtgtataagtttcctctctgc |
18870842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 16230761 - 16230865
Alignment:
| Q |
1 |
aatcacaagctatcatacatgtgactttagaagtagttatcattaaggtcaaacacgtttaatgatctgacaattacgattgaatgacgttgtaaaaatc |
100 |
Q |
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|||||||| | |||||| | ||| ||||||||||||||| ||||| |||||||| || ||||||| | | |||||||| || |||| |||||||||| |
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| T |
16230761 |
aatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaacattttaaatgatcagtcgattacgatcgattgacagtgtaaaaatc |
16230860 |
T |
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| Q |
101 |
tttac |
105 |
Q |
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||||| |
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| T |
16230861 |
tttac |
16230865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 31650352 - 31650298
Alignment:
| Q |
22 |
tgactttagaagtagttatcattaaggtcaaacacgtttaatgatctgacaatta |
76 |
Q |
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| T |
31650352 |
tgactttagaagtagttatgattaaagtcaaacatttttaatgatccgacaatta |
31650298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 35170024 - 35169947
Alignment:
| Q |
20 |
tgtgactttagaagtagttatcattaaggtcaaacacgtttaatgatctgacaattacgattgaatgacgttgtaaaa |
97 |
Q |
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| T |
35170024 |
tgtgactttagaagtagttatgattaaagtcaaacatctttaataatctaacgattacaattgattgacagtgtaaaa |
35169947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 46214537 - 46214456
Alignment:
| Q |
1 |
aatcacaagctatcatacatgtgactttagaagtagttatcattaaggtcaaacacgtttaatgatctgacaattacgattg |
82 |
Q |
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|||||||||| |||||||| ||||||||||||| | || ||||| ||||||| ||| |||||||||| |||||||||| |
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| T |
46214537 |
aatcacaagcaatcatacacatgactttagaagtcataatgattaaagtcaaacgttttttatgatctgactattacgattg |
46214456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 43059512 - 43059472
Alignment:
| Q |
13 |
tcatacatgtgactttagaagtagttatcattaaggtcaaa |
53 |
Q |
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| T |
43059512 |
tcatacatgtgactttagaagtagttattattaaagtcaaa |
43059472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 39560344 - 39560405
Alignment:
| Q |
22 |
tgactttagaagtagttatcattaaggtcaaacacgtttaatgatctgacaattacgattga |
83 |
Q |
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| T |
39560344 |
tgactttagaagtagttatgattaaagtcaaacatttttaatgatatggtgattacgattga |
39560405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 15867621 - 15867685
Alignment:
| Q |
34 |
tagttatcattaaggtcaaacacgtttaatgatctgacaattacgattgaatgacgttgtaaaaa |
98 |
Q |
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||||||| ||||| |||||||| ||||||||| |||| |||| |||||| |||||||||||||| |
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| T |
15867621 |
tagttatgattaaagtcaaacagttttaatgatatgacgattatgattgattgacgttgtaaaaa |
15867685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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