View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4850_low_49 (Length: 255)
Name: NF4850_low_49
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_49 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 3427891 - 3428126
Alignment:
| Q |
1 |
aattgaccaacaaaaatttcatcattcgatccaatattatagttcgcaattgcatatgaattagattacttatgtctttggttatttaattaacttctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3427891 |
aattgaccaacaaaaatttcatcattcgatccaatattatagttcgcaattgcatatgaattagattacttatgtctttggttatttaattaacttctat |
3427990 |
T |
|
| Q |
101 |
tgtaatttataataactaaagaaatgtttgattcttctttctgatccaactttacttcactgtgtttatcaaaggatgcagaaaatggtcccatatttcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3427991 |
tgtaatttataataactaaagaaatgtttgattcttctttctgatccaactttacttcactgtgtttatcaaaggatgcagaaaatgctcccatatttcc |
3428090 |
T |
|
| Q |
201 |
atttatccgagcactctttataggcaagggtatatc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3428091 |
atttatccgagcactctttataggcaagggtatatc |
3428126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 236
Target Start/End: Original strand, 3367309 - 3367445
Alignment:
| Q |
100 |
ttgtaatttataataactaaagaaatgtttgattcttctttctgatccaactttacttcactgtgtttatcaaaggatgcagaaaatggtcccatatttc |
199 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||| |||||||||| | ||| |||||| ||| ||||| ||| || |||||| || ||||||| |
|
|
| T |
3367309 |
ttgtaattaataataacgatagaaatgtttgattctactttctgatctgattttgcttcacaaagttgatcaattgattcacaaaatgtccctatatttc |
3367408 |
T |
|
| Q |
200 |
catttatccgagcactctttataggcaagggtatatc |
236 |
Q |
| |
|
|||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
3367409 |
catttacttgagcacccttcataggcaagggtatatc |
3367445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University