View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_54 (Length: 251)
Name: NF4850_low_54
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_54 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 33632476 - 33632245
Alignment:
| Q |
1 |
ctcctcaaaagtgagcaataccaaccatttaagaacaaatcaatagttgatatttatatacatatgcataacaaatcaagagtgtgttggattatcaacc |
100 |
Q |
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| T |
33632476 |
ctcctcaaaagtgagcaataccaaccatttaagaacaaatcaatagttgatgtttatatacatatgcataacaaatcaagagtgtgttggattatcaacc |
33632377 |
T |
|
| Q |
101 |
attgattttcccactttagtggaggagccaaatccctcattacgtatattgaagtatcagtggatttaattgtgatgaagatttgacacatatactgagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632376 |
attgattttcccactttagtggaggagccaaatccctcattacgtatattgaagtatcagtggatttaattgtgatgaagatttgacacatatactgagc |
33632277 |
T |
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| Q |
201 |
cttgctgtgtttgtgcttgtagaccttctgag |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
33632276 |
cttgctgtgtttgtgcttgtagaccttctgag |
33632245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 232
Target Start/End: Original strand, 29193476 - 29193703
Alignment:
| Q |
5 |
tcaaaagtgagcaataccaaccatttaagaacaaatcaatagttgatatttatatacatatgcataacaaatcaagagtgtgttggattatcaaccattg |
104 |
Q |
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|||||||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| |
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| T |
29193476 |
tcaaaagtaagtaataccaaccatttatgaacaaatcaatagtagatatttatatacatatacataacaaatcaagagtgtattggattatcaataattg |
29193575 |
T |
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| Q |
105 |
attttcccactttagtggaggagccaaatccctcattacgtatattgaagtatcagtggatttaattgtgatgaagatttgacacatatactgagccttg |
204 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |
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| T |
29193576 |
attttcccactatagtggaggagccaaatccctcattacctatattgaagtatcagttaacttaattgtgatgaagctttgacacatatactgagccttg |
29193675 |
T |
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| Q |
205 |
ctgtgtttgtgcttgtagaccttctgag |
232 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29193676 |
ctgtgtttgtgcttgtagaccttctgag |
29193703 |
T |
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