View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_56 (Length: 246)
Name: NF4850_low_56
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_56 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 6452725 - 6452481
Alignment:
| Q |
19 |
catacctcattggttaactcctgttaactatagctatatgggataccaataccaatgtttaatgcat-------------------tatttactttgacc |
99 |
Q |
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| T |
6452725 |
catacctcattggttaactcctgttaactatagctatatgggataccaataccaatgtttaatgcataccatagctatagttgcattatttactttgacc |
6452626 |
T |
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| Q |
100 |
atgactatcattcttttatatgttttgcaaccaaccacttcaattatgtctatctgcttatttacattatttaagttaatatatatatgtatcctaagta |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6452625 |
atgactatcattcttttatatgttttgcaaccaaccacttcaattatgtctatcttcttatttacattatttaagttaatat--atatgtatcctaagta |
6452528 |
T |
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| Q |
200 |
caaagatttgacttgttcataaaacataaaataaaatatcaaagatt |
246 |
Q |
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| T |
6452527 |
caaagatttgacttgttcataaaacataaaataaaaaatcaaagatt |
6452481 |
T |
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