View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4850_low_9 (Length: 551)
Name: NF4850_low_9
Description: NF4850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4850_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 542
Target Start/End: Complemental strand, 36926012 - 36925471
Alignment:
| Q |
1 |
ttgagttttgaccgtattttcttcactaatgcaaactgcttgattaccattggtacatgcacaagagttttgatcttcttgattttttgcaacggcaatg |
100 |
Q |
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| T |
36926012 |
ttgagttttgaccgtattttcttcactaatgcaaactgcttgattaccattggtacatgcacaagagttttgatcttcttgattttttgcaacggcaatg |
36925913 |
T |
|
| Q |
101 |
catatcaacagaactgtttacatgcattgatataaacaaattataaaatcataataaaatatgacagcttagaattactaaattttaattttgtttcaat |
200 |
Q |
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| T |
36925912 |
catatcaacagaactgtttacatgcattgatataaacaaattataaaatcataataaaatatgaaagcttagaattactaaattttaattttgtttcaat |
36925813 |
T |
|
| Q |
201 |
caatagcataaattcctaccttatcttataaactgtatctattacatttaggatatttaatatctttatttagtgaattcatttagccaccaaaacttaa |
300 |
Q |
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| T |
36925812 |
caatagcataaattcctatcttatcttataaagtgtatctattacatttaggatatttaatatctttatttagtgaattcatttagcctccaaaacttaa |
36925713 |
T |
|
| Q |
301 |
taaatttggccatttaaaaggcaataaatacgaaaaatcctcaagaagaatttcttgcaataatgtggttgtactgaaactgactacgtagagcagacca |
400 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36925712 |
taaatttggccatttaaaatgcaataaatacgaaaaatcctcaagaaggatttcttgcaataatgtggttgtattgaaactgactacgtagagcagacca |
36925613 |
T |
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| Q |
401 |
tttataatcgacctcaaatatttgttgccgagctttcatttgatcttccacaatttgatttttgtctttcctcaaattctccagctccgttttgtagcct |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36925612 |
tttataatcgacctcaaatatttgttgccgagctttcatttgatcttccacaatttgatttttgtctttcctcaaattctccagctcagttttgtagcct |
36925513 |
T |
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| Q |
501 |
atagtttcttgaatgcatttatccttctcctcttgatgatgt |
542 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36925512 |
atagtttcttgaatgcatttatccttctcctcttgaagatgt |
36925471 |
T |
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