View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4851-Insertion-1 (Length: 1020)

Name: NF4851-Insertion-1
Description: NF4851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4851-Insertion-1
NF4851-Insertion-1
[»] chr8 (7 HSPs)
chr8 (7-1016)||(14003374-14004379)
chr8 (7-1016)||(5766425-5767430)
chr8 (142-243)||(17635611-17635712)
chr8 (187-317)||(18314638-18314768)
chr8 (798-843)||(17627610-17627655)
chr8 (142-243)||(17642890-17642991)
chr8 (277-314)||(17643025-17643062)
[»] chr4 (12 HSPs)
chr4 (371-492)||(1481511-1481632)
chr4 (145-314)||(8186317-8186486)
chr4 (47-202)||(1481684-1481836)
chr4 (692-823)||(641449-641580)
chr4 (373-488)||(8186539-8186654)
chr4 (799-877)||(547382-547460)
chr4 (797-895)||(55908278-55908376)
chr4 (154-246)||(661855-661947)
chr4 (674-734)||(1601013-1601073)
chr4 (377-439)||(532630-532692)
chr4 (366-420)||(7225324-7225378)
chr4 (695-820)||(3438101-3438226)
[»] chr1 (3 HSPs)
chr1 (803-877)||(19468064-19468138)
chr1 (371-416)||(19467627-19467672)
chr1 (50-83)||(30827961-30827994)
[»] chr5 (2 HSPs)
chr5 (677-904)||(38266985-38267213)
chr5 (211-314)||(29021726-29021829)
[»] chr6 (5 HSPs)
chr6 (142-225)||(7132323-7132406)
chr6 (142-225)||(7135246-7135329)
chr6 (142-225)||(7138169-7138252)
chr6 (185-293)||(6403528-6403636)
chr6 (142-246)||(8913375-8913479)
[»] scaffold0262 (1 HSPs)
scaffold0262 (803-873)||(390-460)
[»] chr2 (2 HSPs)
chr2 (797-895)||(1037214-1037312)
chr2 (146-246)||(1036570-1036670)


Alignment Details
Target: chr8 (Bit Score: 922; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 922; E-Value: 0
Query Start/End: Original strand, 7 - 1016
Target Start/End: Complemental strand, 14004379 - 14003374
Alignment:
Q  7 actatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004379 actatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatg 14004280  T
Q  107 cacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14004279 cacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctc 14004180  T
Q  207 tcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaa 306  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004179 tcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaa 14004080  T
Q  307 gaactcgacctcgcttacccctctaaaatcattaatcacacacgtgctaccttctccactggactagaggctctttcattagcactcatcaaactccgca 406  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004079 gaactcgacctcgcttacccctctaaaatcattaatcacacacatgctaccttctccactggactagaggctctttcattagcactcatcaaactccgca 14003980  T
Q  407 aggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgcaagtttctccaagaggtcatcttgcttagatgtga 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14003979 aggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgcaagtttctccaagatgtcatcttgcttagatgtga 14003880  T
Q  507 acaattaaccgtcgcaggcattgatcttgctctccgccagaaaccaacattgacttctttatccattacaggtactgttactactggtttggaacatctt 606  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14003879 acaattaaccgtcgcaggcgttgatcttgctctccgccagagaccaacattgacttctttatccattacaggtactgttactactggtttggaatatctt 14003780  T
Q  607 acctcacatttcatcgactccttgttgagtttgaagggatttgacttctcttcttttgacgggatttcgtatctcagatcaattcctctcctccattgca 706  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14003779 acctcacatttcatcgactccttgttgagtttgaaggga-ttgacttctcttcttttgacgggatttcatatctcagatcaattcctctcctccattgca 14003681  T
Q  707 atggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaac 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003680 atggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaac 14003581  T
Q  807 atttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaattgtcg 906  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14003580 atttggatcttcaatatgctgattttttgaatgatcattgtgctgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaattgtcg 14003481  T
Q  907 cttgcgcagagtttccactttctttgcccctcattaccaactgtccttcacctaccgagatcaatatgaatcgcacaaaatattccaggggaccaccata 1006  Q
    ||||| || ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  14003480 cttgctcacagtttccactttctttg-ctctcattaccaactgtccttcacttaccgagatcaatatgaatcgcac-aaata-tccagggaaccaccata 14003384  T
Q  1007 cctaattctc 1016  Q
    ||||||||||    
T  14003383 cctaattctc 14003374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 882; E-Value: 0
Query Start/End: Original strand, 7 - 1016
Target Start/End: Original strand, 5766425 - 5767430
Alignment:
Q  7 actatcttgtatccaaccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatg 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  5766425 actatcttgtatccagccctacctgtcctccctggcctattacaaaggttcaccaaactcacctccctcgacctctcgtactattacggtgacctagatg 5766524  T
Q  107 cacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctc 206  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766525 cacttcttactcaaatctctagcttcccaatgttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctc 5766624  T
Q  207 tcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaa 306  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||  ||||||||||||||||    
T  5766625 tcagaacattacaactttgacctcacttatttgttccaaccttatttctcttaatagcactgatatccacctcattgctgatacttttcctttgctagaa 5766724  T
Q  307 gaactcgacctcgcttacccctctaaaatcattaatcacacacgtgctaccttctccactggactagaggctctttcattagcactcatcaaactccgca 406  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766725 gaacttgacctcgcttacccctctaaaatcattaatcacacacatgctaccttctccactggactagaggctctttcattagcactcatcaaactccgca 5766824  T
Q  407 aggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgcaagtttctccaagaggtcatcttgcttagatgtga 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5766825 aggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgcaagtttctccaagaggtcatcttgcttagatgtga 5766924  T
Q  507 acaattaaccgtcgcaggcattgatcttgctctccgccagaaaccaacattgacttctttatccattacaggtactgttactactggtttggaacatctt 606  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5766925 acaattaaccatcgcaggcgttgatcttgctctcctccagaaaccaacattgacttctttatccattacatgtactgttactactggtttggaacatctt 5767024  T
Q  607 acctcacatttcatcgactccttgttgagtttgaagggatttgacttctcttcttttgacgggatttcgtatctcagatcaattcctctcctccattgca 706  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5767025 acctcacatttcatcgactccttgttgagtttgaaggga-ttgacttctcttcttttgacgggatttcgtatctcagatcaatttctctcctccattgca 5767123  T
Q  707 atggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaac 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5767124 atggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcgaaacgtatccaac 5767223  T
Q  807 atttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaaccttggtaattgtcg 906  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5767224 atttggatcttcaatatactgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctctcaaccttggtaattgtcg 5767323  T
Q  907 cttgcgcagagtttccactttctttgcccctcattaccaactgtccttcacctaccgagatcaatatgaatcgcacaaaatattccaggggaccaccata 1006  Q
    ||||| || ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  5767324 cttgctcacagtttccactttctttg-ctctcattaccaactgtccttcacttaccgagatcaatatgaatcgcac-aaata-tccagggaaccaccata 5767420  T
Q  1007 cctaattctc 1016  Q
    ||||||||||    
T  5767421 cctaattctc 5767430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 17635611 - 17635712
Alignment:
Q  142 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 241  Q
    ||||||| ||| |||||||| ||||||||||||| | ||||  ||||||| || ||||||||||| ||||| ||||||||||||||||| || | |||||    
T  17635611 aaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgtt 17635710  T
Q  242 cc 243  Q
    ||    
T  17635711 cc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 317
Target Start/End: Original strand, 18314638 - 18314768
Alignment:
Q  187 aatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctg 286  Q
    ||||| || |||| ||||||||  || ||||||||||||||||||||    |||||  || || | |||||  || |||||||||||   ||||||||||    
T  18314638 aatggcttacgagttttctctcaaaatattacaactttgacctcactctcatgttcttacattcaatctctccatggcactgatctcttcctcattgctg 18314737  T
Q  287 attgttttcctttgctagaagaactcgacct 317  Q
    ||||||| |||||||| ||||||||||||||    
T  18314738 attgtttccctttgctcgaagaactcgacct 18314768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 798 - 843
Target Start/End: Original strand, 17627610 - 17627655
Alignment:
Q  798 gtatccaacatttggatcttcaatatgctgattttttgaatgatca 843  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  17627610 gtatccaacatttggatcttcagtatgcttattttttgaataatca 17627655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 17642890 - 17642991
Alignment:
Q  142 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 241  Q
    ||||||||||| |||||||| |||||||| |||| | ||||  | ||||| || | ||||||||| | ||| ||||||||||||||||| || | |||||    
T  17642890 aaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgtt 17642989  T
Q  242 cc 243  Q
    ||    
T  17642990 cc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 17643025 - 17643062
Alignment:
Q  277 ctcattgctgattgttttcctttgctagaagaactcga 314  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  17643025 ctcatcgctgattgtttccctttgctagaagaactcga 17643062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 5e-31; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 371 - 492
Target Start/End: Complemental strand, 1481632 - 1481511
Alignment:
Q  371 tagaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactg 470  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||  |||| |||||| || |||||||| ||| ||||||||||||||    
T  1481632 tagaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacgacattttgctttttcaattgttcaagaactg 1481533  T
Q  471 caagtttctccaagaggtcatc 492  Q
    |||||||||| || ||||||||    
T  1481532 caagtttctcgaaaaggtcatc 1481511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 145 - 314
Target Start/End: Original strand, 8186317 - 8186486
Alignment:
Q  145 ctcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttcca 244  Q
    |||||||| |||||||| || ||| ||| || | ||||||| ||||| ||||||| | |||| || || |||||||||||||||||||| |  |||||||    
T  8186317 ctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttcca 8186416  T
Q  245 accttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaactcga 314  Q
    || || | ||| | |||||||||||  ||   ||||| || |||||||||||||| ||||||||||||||    
T  8186417 acattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcga 8186486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 202
Target Start/End: Complemental strand, 1481836 - 1481684
Alignment:
Q  47 tacaaaggttcaccaaactcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaact 146  Q
    |||||||||||||||| ||||||||  | ||||| || | ||| ||   | |||||||||| ||||| || ||||||||  | |||||| ||   |||||    
T  1481836 tacaaaggttcaccaatctcacctcttttgacctttccttctactactttaacctcgatgcgcttctcacccaaatctcctgtttcccattg---aaact 1481740  T
Q  147 cacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctt 202  Q
    ||||||||||||| | || |||||||||| |||||| |||||||| ||||||||||    
T  1481739 cacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcgagctt 1481684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 692 - 823
Target Start/End: Complemental strand, 641580 - 641449
Alignment:
Q  692 ctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagt 791  Q
    |||||||| ||||||||| || | |||||||||| ||| ||||| ||| || ||||| |||| |||||||||  ||||||||  | ||||||||| |||     
T  641580 ctctcctctattgcaatgaaaggccttcctttgacgagacttgtcctctgcaattgcaccggctatacttatgatggaatcttgtgtttgttatccaaga 641481  T
Q  792 cgaaacgtatccaacatttggatcttcaatat 823  Q
      ||| || | |||||| ||||||||||||||    
T  641480 gtaaatgtttacaacatctggatcttcaatat 641449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 373 - 488
Target Start/End: Original strand, 8186539 - 8186654
Alignment:
Q  373 gaggctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacggcactttgctttctcacttgttcaagaactgca 472  Q
    |||||||||||||| |||||  ||||||| |||||||||||||| ||| |||||  |||  |||||| ||  ||||||| ||||||||| ||||| || |    
T  8186539 gaggctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaattgta 8186638  T
Q  473 agtttctccaagaggt 488  Q
    ||  |||| |||||||    
T  8186639 agcatctcgaagaggt 8186654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 799 - 877
Target Start/End: Complemental strand, 547460 - 547382
Alignment:
Q  799 tatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat 877  Q
    |||||||||||| ||||||||| |||||| |||||||| | ||||   ||||  ||| |||||||||||||||||||||    
T  547460 tatccaacatttagatcttcaaaatgctgtttttttgactaatcaacatgttcttgacttgtctttgtttcttggtgat 547382  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 797 - 895
Target Start/End: Original strand, 55908278 - 55908376
Alignment:
Q  797 cgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt 895  Q
    ||||| |||||||||||||||||| ||||    ||| ||||||||||   ||| || |||||||||||||||||||||||| || | ||||| ||||||    
T  55908278 cgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt 55908376  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 661947 - 661855
Alignment:
Q  154 ctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaac 246  Q
    |||||||| |||||||||  || | |||| ||||||||||||||||||||||| |   | ||||||||||| ||||| || ||||||| ||||    
T  661947 ctcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgttacaac 661855  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 674 - 734
Target Start/End: Complemental strand, 1601073 - 1601013
Alignment:
Q  674 cgtatctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttg 734  Q
    |||||||| ||||| || |||||||| ||||||| ||||| || |||||||||||||||||    
T  1601073 cgtatctcggatcagttgctctcctctattgcaaaggaaaatcctcctttgaggaggcttg 1601013  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 377 - 439
Target Start/End: Complemental strand, 532692 - 532630
Alignment:
Q  377 ctctttcattagcactcatcaaactccgcaaggttaatctctcttatcatggctacctcaacg 439  Q
    ||||||||||| ||||  |||||||||||||||||||||| |||  ||||| |||| ||||||    
T  532692 ctctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacg 532630  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 366 - 420
Target Start/End: Original strand, 7225324 - 7225378
Alignment:
Q  366 tggactagaggctctttcattagcactcatcaaactccgcaaggttaatctctct 420  Q
    |||| ||||||||||||||| ||||||  |||||||||| | |||||||||||||    
T  7225324 tggagtagaggctctttcatcagcacttttcaaactccgtagggttaatctctct 7225378  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 695 - 820
Target Start/End: Original strand, 3438101 - 3438226
Alignment:
Q  695 tcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatctcatttttgttatctaagtcga 794  Q
    ||||| |||||||| | | ||||||||||||| |||||||| |||  | ||||| |||| |||| |||| ||| |||||  | | ||||||| ||||       
T  3438101 tcctctattgcaattggaggtcttcctttgagaaggcttgtcctccacaattgcaccggctatagttatgctgaaatcttttctctgttatccaagtgtc 3438200  T
Q  795 aacgtatccaacatttggatcttcaa 820  Q
    || |||| ||||||||||||||||||    
T  3438201 aatgtatacaacatttggatcttcaa 3438226  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 803 - 877
Target Start/End: Original strand, 19468064 - 19468138
Alignment:
Q  803 caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgat 877  Q
    ||||||||||||||||||  |||||  |||||||||||||| | ||||| | |||||||||||||||||||||||    
T  19468064 caacatttggatcttcaacgtgctgggtttttgaatgatcactatgttgataagttgtctttgtttcttggtgat 19468138  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 19467627 - 19467672
Alignment:
Q  371 tagaggctctttcattagcactcatcaaactccgcaaggttaatct 416  Q
    |||||||||||||| | |||||  ||||||||||||||||||||||    
T  19467627 tagaggctctttcacttgcacttctcaaactccgcaaggttaatct 19467672  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 83
Target Start/End: Complemental strand, 30827994 - 30827961
Alignment:
Q  50 aaaggttcaccaaactcacctccctcgacctctc 83  Q
    ||||||||||||| ||||||||||||||||||||    
T  30827994 aaaggttcaccaatctcacctccctcgacctctc 30827961  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 677 - 904
Target Start/End: Original strand, 38266985 - 38267213
Alignment:
Q  677 atctcagatcaattcctctcctccattgcaatggaaagtcttcctttgaggaggcttgtactcagctattgccccggatatacttattctggaatc-tca 775  Q
    ||||| ||||| ||||| ||||| ||||||||| ||||||||||||||| ||| ||||  ||| | |||||| |||| || ||||  ||||||||| |      
T  38266985 atctccgatcacttcctttcctctattgcaatgcaaagtcttcctttgacgagccttggcctcggatattgcaccggctacactttctctggaatcttgc 38267084  T
Q  776 tttttgttatctaagtcgaaacgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtg 875  Q
    ||||| |||||  | |    |||||| ||||||||||| |||||| |  |||||||| | | ||||||   |||||| ||||||||||||||||||  |     
T  38267085 ttttttttatcctactgtccacgtatacaacatttggaccttcaagaaactgattttctcactgatcaccatgttgccgagttgtctttgtttcttcctc 38267184  T
Q  876 atctgctctctatcaaccttggtaattgt 904  Q
    ||||| | ||||| |||||| || |||||    
T  38267185 atctggtgtctataaaccttagttattgt 38267213  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 314
Target Start/End: Complemental strand, 29021829 - 29021726
Alignment:
Q  211 aacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgctgattgttttcctttgctagaagaac 310  Q
    |||||||| ||||||||||| || | ||||| | ||||| |  | || ||||||||| |||||  ||| ||||||||||| || |||||||| |||||||    
T  29021829 aacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctctttcttattgctgattgcttccctttgctcgaagaac 29021730  T
Q  311 tcga 314  Q
    ||||    
T  29021729 tcga 29021726  T

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Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 7132406 - 7132323
Alignment:
Q  142 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 225  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7132406 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 7135329 - 7135246
Alignment:
Q  142 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 225  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7135329 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 7138252 - 7138169
Alignment:
Q  142 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 225  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7138252 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 293
Target Start/End: Complemental strand, 6403636 - 6403528
Alignment:
Q  185 ctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgc 284  Q
    ||||||| |||||||||||||| || ||  | || ||||||||||| |||  ||||||| || || |||||||||||||| || |||||   ||||||||    
T  6403636 ctaatgggttgcgagctttctcccgaaaggtcactactttgacctctcttgattgttccgacattgattctcttaatagctctcatctcttactcattgc 6403537  T
Q  285 tgattgttt 293  Q
     ||||||||    
T  6403536 cgattgttt 6403528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 246
Target Start/End: Original strand, 8913375 - 8913479
Alignment:
Q  142 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 241  Q
    |||||||||||||||||| | |||||||||   | | ||||||||||||| |||| || ||| |||   || ||||||||||||||||| || | |||||    
T  8913375 aaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T
Q  242 ccaac 246  Q
    |||||    
T  8913475 ccaac 8913479  T

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Target: scaffold0262 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 803 - 873
Target Start/End: Complemental strand, 460 - 390
Alignment:
Q  803 caacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttgg 873  Q
    |||||||||||||||||| ||||    ||| |||||||||||  |||||| ||||||||||||||||||||    
T  460 caacatttggatcttcaaaatgccatgtttatgaatgatcatgatgttgcagagttgtctttgtttcttgg 390  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 797 - 895
Target Start/End: Original strand, 1037214 - 1037312
Alignment:
Q  797 cgtatccaacatttggatcttcaatatgctgattttttgaatgatcattgtgttgctgagttgtctttgtttcttggtgatctgctctctatcaacctt 895  Q
    ||||| |||||||||||||||||| ||||    ||| ||||||||||   ||| || |||||||||||||||||||||||| || | ||||| ||||||    
T  1037214 cgtatacaacatttggatcttcaaaatgccacgtttatgaatgatcacgatgtcgcagagttgtctttgtttcttggtgatttggtgtctataaacctt 1037312  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 1036570 - 1036670
Alignment:
Q  146 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 245  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||| || || |||||||||||    
T  1036570 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T
Q  246 c 246  Q
    |    
T  1036670 c 1036670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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