View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4851-Insertion-2 (Length: 829)
Name: NF4851-Insertion-2
Description: NF4851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4851-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 337 - 625
Target Start/End: Complemental strand, 659776 - 659491
Alignment:
| Q |
337 |
catttttattagttgaactcttgctatgaaatgtgnnnnnnnnnnnngtctcgttttatttatttagttctcatcaatctctctaatttgccattacaaa |
436 |
Q |
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| T |
659776 |
catttttattagttgaactcttgctatgaaatgtgttttttttt---gtctcgttttatttatttagttctcatcaatctctctaatttgccattacaaa |
659680 |
T |
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| Q |
437 |
gttggcaatttctagtttgtagaacactctttcttctatcattttgcatatctcatgcatataccatgaccaagtgatccgatgaatgaaatattcttca |
536 |
Q |
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| T |
659679 |
gttggcaatttctagtttgtagaatactctttcttctatcattttgcatatctcatgcatataccatgaccaagtgatccgatgaatgaaatattcttca |
659580 |
T |
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| Q |
537 |
tttttagaaacattattggtatttggtaggagcaatgtttcatccaaaacacacgaagagagcatattattggaccaatcgaaatactg |
625 |
Q |
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| T |
659579 |
tttttagaaacattattggtatttggtaggagcaatgtttcatccaaaacacacgaagagagcatattattggaccaatcgaaatactg |
659491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 705 - 829
Target Start/End: Complemental strand, 659383 - 659258
Alignment:
| Q |
705 |
tagaatatgggtgaaaaccaaacctattagatgcagtcgtttatttttgtcccgtgctacattacattttttc-ttttggaatatccccctctcctttta |
803 |
Q |
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| T |
659383 |
tagaatatgggtgaaaaacaaacctattagatgcagtcgtttattgttgtctcgtgctacattacattttttctttttggaatatccccctctcctttta |
659284 |
T |
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| Q |
804 |
aattttcattctctctgtatattttc |
829 |
Q |
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| T |
659283 |
aattttcattctctcagtatattttc |
659258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 49396785 - 49396741
Alignment:
| Q |
50 |
gatgtttataaaaatgaaatgttatagaaagttggtggctcattt |
94 |
Q |
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| T |
49396785 |
gatgtttataagaatgaaatgttagagaaagttggtggctcattt |
49396741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 5476261 - 5476214
Alignment:
| Q |
158 |
caaataaaactactaaaactgttattttgagttaaataatacatagtt |
205 |
Q |
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| T |
5476261 |
caaataaaactactaaaactattattttgagtgaaatattacatagtt |
5476214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 187
Target Start/End: Complemental strand, 5006770 - 5006741
Alignment:
| Q |
158 |
caaataaaactactaaaactgttattttga |
187 |
Q |
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| T |
5006770 |
caaataaaactactaaaactgttattttga |
5006741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 4065954 - 4065879
Alignment:
| Q |
32 |
aatttcttttacata--aaggatgtttataaaaatgaaatgttatagaaagttggtggctcattttgttctaatta |
105 |
Q |
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| T |
4065954 |
aattttttttacatacaaaagatgtttataagaatgaaatgttgaaaaaagtttgtggcttattttgttctaatta |
4065879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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