View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4851-Insertion-6 (Length: 222)

Name: NF4851-Insertion-6
Description: NF4851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4851-Insertion-6
NF4851-Insertion-6
[»] chr1 (5 HSPs)
chr1 (56-156)||(4064118-4064218)
chr1 (96-139)||(16316258-16316301)
chr1 (96-166)||(38831881-38831951)
chr1 (110-160)||(38707908-38707958)
chr1 (96-168)||(14687225-14687297)
[»] chr4 (6 HSPs)
chr4 (96-169)||(5580315-5580388)
chr4 (101-132)||(34341442-34341473)
chr4 (102-151)||(44568687-44568736)
chr4 (99-132)||(47519295-47519328)
chr4 (102-134)||(42009677-42009709)
chr4 (99-166)||(48632133-48632198)
[»] chr2 (3 HSPs)
chr2 (96-169)||(42784061-42784134)
chr2 (96-168)||(16562660-16562732)
chr2 (96-160)||(20681845-20681909)
[»] chr5 (1 HSPs)
chr5 (100-133)||(8335132-8335165)
[»] chr3 (1 HSPs)
chr3 (96-157)||(32072761-32072822)
[»] chr8 (2 HSPs)
chr8 (100-132)||(3670561-3670593)
chr8 (102-166)||(6859939-6860003)
[»] chr7 (1 HSPs)
chr7 (100-160)||(40059020-40059080)
[»] chr6 (1 HSPs)
chr6 (100-144)||(10008212-10008255)


Alignment Details
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 4064118 - 4064218
Alignment:
Q  56 atgttaaggagtgcctttaagacattggttattgtatcataagtagtaagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttg 155  Q
    ||||||| ||||| |||||||| ||||||||  |||| | |||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||    
T  4064118 atgttaatgagtgtctttaagatattggttaaagtattaaaagtagtaagtttgaattaaaaagttgtgtaattattacattgacaaaagtaataacttg 4064217  T
Q  156 t 156  Q
    |    
T  4064218 t 4064218  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 16316301 - 16316258
Alignment:
Q  96 aagtagtaagtttgtattaaaaagttgtgtaattattacattga 139  Q
    ||||||||||||| |||||||||||||||||| |||||||||||    
T  16316301 aagtagtaagtttatattaaaaagttgtgtaactattacattga 16316258  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 38831951 - 38831881
Alignment:
Q  96 aagtagtaagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttgtatttctaaga 166  Q
    ||||||||| ||| | ||||||| ||||||||||||||| | ||| |||||||||| |||||||| |||||    
T  38831951 aagtagtaaatttatgttaaaaaattgtgtaattattacttagataaaagtaacaatttgtatttttaaga 38831881  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 38707908 - 38707958
Alignment:
Q  110 tattaaaaagttgtgtaattattacattgatcaaagtaacaacttgtattt 160  Q
    |||||||||||||||||||||||  |||||| ||| |||||| ||||||||    
T  38707908 tattaaaaagttgtgtaattattgtattgataaaaataacaatttgtattt 38707958  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 14687297 - 14687225
Alignment:
Q  96 aagtagtaagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttgtatttctaagata 168  Q
    ||||| |||||||||   ||||||| ||||| ||||||||||||  ||||||||| ||| |||||||| ||||    
T  14687297 aagtaataagtttgttaaaaaaagtggtgtacttattacattgacaaaagtaacatcttatatttctaggata 14687225  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 5580315 - 5580388
Alignment:
Q  96 aagtagtaagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttgtatttctaagataa 169  Q
    |||||| |||||| ||||||||||||||||||||||||||||||  |||| ||||| |||||||||||||||||    
T  5580315 aagtagaaagtttatattaaaaagttgtgtaattattacattgactaaaggaacaatttgtatttctaagataa 5580388  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 132
Target Start/End: Original strand, 34341442 - 34341473
Alignment:
Q  101 gtaagtttgtattaaaaagttgtgtaattatt 132  Q
    ||||||||||||||||||||||||||||||||    
T  34341442 gtaagtttgtattaaaaagttgtgtaattatt 34341473  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 44568736 - 44568687
Alignment:
Q  102 taagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaa 151  Q
    ||||||| |||||| ||||  |||||||||||||||||||||| ||||||    
T  44568736 taagtttttattaataagtgatgtaattattacattgatcaaaataacaa 44568687  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 47519328 - 47519295
Alignment:
Q  99 tagtaagtttgtattaaaaagttgtgtaattatt 132  Q
    ||||||||||| ||||||||||||||||||||||    
T  47519328 tagtaagtttgcattaaaaagttgtgtaattatt 47519295  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 42009677 - 42009709
Alignment:
Q  102 taagtttgtattaaaaagttgtgtaattattac 134  Q
    |||||||| ||||||||||||||||||||||||    
T  42009677 taagtttgaattaaaaagttgtgtaattattac 42009709  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 48632198 - 48632133
Alignment:
Q  99 tagtaagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttgtatttctaaga 166  Q
    ||||||||||  |||||||||||||||| |||||  |||||| ||||||||||  ||||||| |||||    
T  48632198 tagtaagtttaaattaaaaagttgtgtatttatt--attgataaaagtaacaatatgtatttttaaga 48632133  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 42784134 - 42784061
Alignment:
Q  96 aagtagtaagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttgtatttctaagataa 169  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||  |||| ||||| ||||||||| |||||||    
T  42784134 aagtagtaaatttatattaaaaagttgtgtaattattgcattgactaaagaaacaatttgtatttccaagataa 42784061  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 16562660 - 16562732
Alignment:
Q  96 aagtagtaagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttgtatttctaagata 168  Q
    |||||| |||||||||||||||||||||||||| |||| |||||  ||||  ||   ||||||||||||||||    
T  16562660 aagtagaaagtttgtattaaaaagttgtgtaatcattatattgactaaaggtacgttttgtatttctaagata 16562732  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 20681845 - 20681909
Alignment:
Q  96 aagtagtaagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttgtattt 160  Q
    ||||||||| ||||||| |||||||||| ||||||||||| | |  ||| ||||||||| |||||    
T  20681845 aagtagtaaatttgtataaaaaagttgtataattattacaataacaaaaataacaacttatattt 20681909  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 133
Target Start/End: Original strand, 8335132 - 8335165
Alignment:
Q  100 agtaagtttgtattaaaaagttgtgtaattatta 133  Q
    ||||||||||||||||||| ||||||||||||||    
T  8335132 agtaagtttgtattaaaaaattgtgtaattatta 8335165  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 32072761 - 32072822
Alignment:
Q  96 aagtagtaagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttgta 157  Q
    ||||||||| ||| |||||||||||||| |||| ||| ||||||  |||| |||||||||||    
T  32072761 aagtagtaaatttatattaaaaagttgtataatcattgcattgactaaagaaacaacttgta 32072822  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 3670561 - 3670593
Alignment:
Q  100 agtaagtttgtattaaaaagttgtgtaattatt 132  Q
    ||||||||| |||||||||||||||||||||||    
T  3670561 agtaagtttttattaaaaagttgtgtaattatt 3670593  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 6859939 - 6860003
Alignment:
Q  102 taagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttgtatttctaaga 166  Q
    ||||||| | |||| ||||||| |||||||  ||||||  ||||||||||| |||||||||||||    
T  6859939 taagtttctgttaataagttgtataattatggcattgacaaaagtaacaacgtgtatttctaaga 6860003  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 40059020 - 40059080
Alignment:
Q  100 agtaagtttgtattaaaaagttgtgtaattattacattgatcaaagtaacaacttgtattt 160  Q
    ||||| ||| |||||||||||||||||||||||| ||| || |||||| ||| || |||||    
T  40059020 agtaaatttatattaaaaagttgtgtaattattaaatttataaaagtatcaatttatattt 40059080  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 10008212 - 10008255
Alignment:
Q  100 agtaagtttgtattaaaaagttgtgtaattattacattgatcaaa 144  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||||    
T  10008212 agtaagtttttattaaaaagtggtgtaattattac-ttgatcaaa 10008255  T

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