View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4851_high_2 (Length: 332)
Name: NF4851_high_2
Description: NF4851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4851_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 4586946 - 4587282
Alignment:
| Q |
1 |
atcatgtgtgaagtgtgacatgtacgattcttttttgtattttcctcactgctctcttctttaactagcagcagaggggatggtatgctgttagtttaaa |
100 |
Q |
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| T |
4586946 |
atcatgtgtgaagtgtgacatgtccgattcttttttgtattttcctcaccgctctcttctttaactagcagcagaggggatggtatgctgttagtttaaa |
4587045 |
T |
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| Q |
101 |
tatgctttgctttgttacatatatat----tgcggttagtttctttagaagatggccatatagtttaaagttcagtccttgttatctccattcttttata |
196 |
Q |
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| T |
4587046 |
tatgctttgctttgttacatatatatatattgtggttagtttctttataagatggccatatagtttacagttcagtccttgttatctccattcttttata |
4587145 |
T |
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| Q |
197 |
caatatataaatttcaaagcaagtaaggtaggcctcgaagctatccatactttattccaaagggaactttcttgaggagggtgttagatgtaaaaatcat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4587146 |
taatatataaatttcaaagcaagtaaggtaggcctcgaagctatccatactttattccaaagggaactttcttgaggggggtgttagatgtaaaaatcat |
4587245 |
T |
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| Q |
297 |
tcacttgctttcaccaataaactt-aaatctttgtgc |
332 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
4587246 |
tcacttgctttcaccaataaacttaaaatctttgtgc |
4587282 |
T |
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