View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4851_high_3 (Length: 253)
Name: NF4851_high_3
Description: NF4851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4851_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 5766200 - 5766431
Alignment:
| Q |
9 |
ccaatgaaaaggcagagaacaaactctttcaaattgaattcatgttcacagcaattgaattct---tcttcttcagatttagatttaccagatgatatat |
105 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
5766200 |
ccaatgaaaaggcagagaacaaattctttcaaattgaattcatgttcacagcaattgaattcttcttcttcttcagaattagatttaccagatgatatat |
5766299 |
T |
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| Q |
106 |
gggaacgtgtgttcagattgctgaaaaataacgacgatgatgaccaccgtaagcgctatttgaagtctctatctgtcgcctcaaaacacttcctctccgt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5766300 |
gggaacgtgtgttcagattgctgaaaaataacgacgatgatgaccaccgtaagcggtatttgaagtctctatctgtcgcctcaaaacacttcctctccgt |
5766399 |
T |
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| Q |
206 |
caccaactgtcacaaattctgtctaactatct |
237 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
5766400 |
caccaaccgtcacaaattctgtctaactatct |
5766431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 14004543 - 14004373
Alignment:
| Q |
61 |
aattgaattcttcttcttcagatttagatttaccagatgatatatgggaacgtgtgttcagattgctgaaaaataacgacgatgatgaccaccgtaagcg |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14004543 |
aattgaattcttcttcttcagatttagatttaccagatgatatatgggaacgtgtgttcagattgctgaaaaataacgacgatgatgaccac------cg |
14004450 |
T |
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| Q |
161 |
ctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtctaactatct |
237 |
Q |
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| T |
14004449 |
ctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcaccaaccgtcacaaattctgtctaactatct |
14004373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 34935748 - 34935814
Alignment:
| Q |
169 |
agtctctatctgtcgcctcaaaacacttcctctccgtcaccaactgtcacaaattctgtctaactat |
235 |
Q |
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| T |
34935748 |
agtctctctctgtctcctccaaacacttcctctccgtcaccaaccgtcacaaattctctctcactat |
34935814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 14004574 - 14004534
Alignment:
| Q |
9 |
ccaatgaaaaggcagagaacaaactctttcaaattgaattc |
49 |
Q |
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| T |
14004574 |
ccaatgaaaaggcagagaacaaactctttcaaattgaattc |
14004534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 238
Target Start/End: Complemental strand, 1482077 - 1481866
Alignment:
| Q |
9 |
ccaatgaaaaggcagagaacaaactctttcaaattgaattcatgttcacagcaattgaattcttcttcttcagatttagatttaccagatgatatatggg |
108 |
Q |
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|||||||||| |||||||||||||||| |||||| ||| |||||| |||||||||| |||||| ||||||||||||||| |||||| |||| |
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| T |
1482077 |
ccaatgaaaaagcagagaacaaactctctcaaat------catcttcacaacaattgaattattcttc---agatttagatttaccggatgattgctggg |
1481987 |
T |
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| Q |
109 |
aacgtgtgttcagattgctgaaaaataacgacgatgatgaccaccgtaagcgctatttgaagtctctatctgtcgcctcaaaacacttcctctccgtcac |
208 |
Q |
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||||||| ||||||||||| || ||||| |||||||| || ||||| |||||||||| || ||||| ||||||||||||||||||||||| |
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| T |
1481986 |
aacgtgtcttcagattgcttaag---------gatgacgaccaccggaaacgctacatgaagtctctctcagtcgcttcaaaacacttcctctccgtcac |
1481896 |
T |
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| Q |
209 |
caactgtcacaaattctgtctaactatctg |
238 |
Q |
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|||| || ||||||||| ||| |||||||| |
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| T |
1481895 |
caacagttacaaattctctctcactatctg |
1481866 |
T |
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