View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4851_low_4 (Length: 257)
Name: NF4851_low_4
Description: NF4851
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4851_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 48962031 - 48962199
Alignment:
| Q |
1 |
tatgtttgttctgattgaaaattttgttttgttcaagttgatgtaattattcaaatactatgagactaaagcctttattccttacctatcatttttagca |
100 |
Q |
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| T |
48962031 |
tatgtttgttctgattgaaaattgtgttttgttcaagttgatgtaattattcaaatactatgagactaaagcctttattccttacctatcatttttagca |
48962130 |
T |
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| Q |
101 |
tattaatattccagactcattttagacctttcatttaggccaatatatgcttgggtagcctagccagca |
169 |
Q |
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| T |
48962131 |
tattaatattccagactcattttagacctttcatttaggccaatatatgcttgggtagcctagccagca |
48962199 |
T |
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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 48962260 - 48962313
Alignment:
| Q |
182 |
tttggaaatgaaagaaaactggaacaggaactaagagaaactatggtatgtgat |
235 |
Q |
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| T |
48962260 |
tttggaaatgaaagaaaactggaacaggaagtaagagaaactatggtatgtgat |
48962313 |
T |
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