View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4852-Insertion-1 (Length: 879)
Name: NF4852-Insertion-1
Description: NF4852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4852-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 752; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 752; E-Value: 0
Query Start/End: Original strand, 7 - 879
Target Start/End: Original strand, 2526713 - 2527583
Alignment:
| Q |
7 |
agattgtacattgaattttgccgcgccagaggctggaattgcgaatggttttcattattactttcatcaacaacttgagaccccatagtttcgatgttag |
106 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2526713 |
agattgtacattgaattttgccgtgccagaggctggaactgcgaatggttttcattattactttcatcaacaacttgagaccccatagtttcgatgttag |
2526812 |
T |
|
| Q |
107 |
gcaagcaatcactaaagaactcactccatatttcatagccttttgctgataaaagacttaaagcaacatatccaaatctttaatcatgtgacccttacaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2526813 |
gcaagcaatcactaaagaactcactccatatttcatagccttttgccgataaaagacttaaagcaacatatccaaatctttaatcatatgacccttacaa |
2526912 |
T |
|
| Q |
207 |
tcagaagctgnnnnnnntaaaatatgaaattagcannnnnnnngccaatcaacaagttcatgatattccaagtaacctataaatcttgcaggaattctaa |
306 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2526913 |
tcagaagctgaaaaaaataaaatatgaaattagcattttttt-gccaatcaacaagttcatgatattccaagtaacctataaatcttgcaggaattctaa |
2527011 |
T |
|
| Q |
307 |
taaaatgaaaagcaaagaggaaactgaactgtcaaatcaaatcttctatgctcattatctctcactctcaatcacaatctcacaattaaagcaaaataaa |
406 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2527012 |
taaa-tgaaaagcaaagaggaaactgaactgtcaaatcaaatcttctatgctcattatctctcactctcaatcacaatctcacaattaaagcaaaataaa |
2527110 |
T |
|
| Q |
407 |
acataaaaactgggccctgtttggatatagggcttaacgaagggcttatagcataaaggct-atcatattattacttatgtataacaaaagataaaatat |
505 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2527111 |
acataaaaactgggccctgtttggatataggggttaacgaagggcttatagcataaaggcttatcatattattacttatgtataacaaaagataaaatat |
2527210 |
T |
|
| Q |
506 |
agtcagacagttttgacataagcaataagatattttcataagctatcttaggttttggaaataagttgaaaacagctcatggacaattcataagttttca |
605 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2527211 |
agtcacacagttttgacataagcaataagatattttcataagctatcttaggttttggaaataagttgaaaacagctcatggacaattcataagttttca |
2527310 |
T |
|
| Q |
606 |
taagctctcttaaacaatgtgcttataccagtaaaatatcaaataagcaaatcgaaacagaccccaattcgcagttggcaacacttatctcttataggga |
705 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2527311 |
taagctctcttaaacaatgtgcttataccagtaaaatatcaaataagcaaatcgaaatagaccccaattcgcaattggcaacacttatctcttataggga |
2527410 |
T |
|
| Q |
706 |
ggtttgtttttgtgttgttaattttaaaatgggtcatgtcatctatgtagccagccctatgcattaatgacagaacctcgtcattaatgttgggaactta |
805 |
Q |
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||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2527411 |
ggtttgtttttttg-tgttaattttaaaatgggtcatgtgatctatgtagccagccctatgcattaatgacagaacctcgtcattaatgttgggaactta |
2527509 |
T |
|
| Q |
806 |
aagtgtgctcttctcaatgtctcaagttcgactccctcggtgccaattttgatgagctagttcatgcagagcaa |
879 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2527510 |
aagtgcgctcttctcaatgtctcaagttcgactccctcggtgccaattttgatgggctagttcatgcagagcaa |
2527583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 625
Target Start/End: Complemental strand, 32578020 - 32577953
Alignment:
| Q |
561 |
tggaaataagttgaaaacagctcatggacaattcataa---gttttcataagctctcttaaacaatgt |
625 |
Q |
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| T |
32578020 |
tggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctctcaaacaatgt |
32577953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 615
Target Start/End: Original strand, 14295463 - 14295599
Alignment:
| Q |
486 |
tataacaaaagataaaatatagtcagacagttttgacataagcaataagatattttcataagctatctt----aggttttggaaataagttgaaaacagc |
581 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||| | |||||| ||||| | ||||| ||||||||| | || |||| ||| |||| |||||||||| |
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| T |
14295463 |
tataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttcgtaagctatcctggagagcttttagaagtaagctgaaaacagc |
14295562 |
T |
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| Q |
582 |
tcatggacaattcataa---gttttcataagctctct |
615 |
Q |
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| T |
14295563 |
ttatcgacatatcataagctgttttcataagctctct |
14295599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 485 - 554
Target Start/End: Original strand, 443890 - 443960
Alignment:
| Q |
485 |
gtataacaaaagataaa-atatagtcagacagttttgacataagcaataagatattttcataagctatctt |
554 |
Q |
| |
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|||| |||||||||||| ||| ||||| |||||||| |||||| ||||||| ||||||||||||||||| |
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| T |
443890 |
gtattacaaaagataaatataaagtcaaacagtttttgtataagctataagatgttttcataagctatctt |
443960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 561 - 603
Target Start/End: Complemental strand, 29590663 - 29590621
Alignment:
| Q |
561 |
tggaaataagttgaaaacagctcatggacaattcataagtttt |
603 |
Q |
| |
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||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
29590663 |
tggaaataagttgaaaacaacttatggacaagtcataagtttt |
29590621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 486 - 550
Target Start/End: Original strand, 1417221 - 1417285
Alignment:
| Q |
486 |
tataacaaaagataaaatatagtcagacagttttgacataagcaataagatattttcataagcta |
550 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||| | |||||||||||| | ||||||||||||| |
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| T |
1417221 |
tataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataagcta |
1417285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 486 - 554
Target Start/End: Original strand, 51630068 - 51630136
Alignment:
| Q |
486 |
tataacaaaagataaaatatagtcagacagttttgacataagcaataagatattttcataagctatctt |
554 |
Q |
| |
|
|||| |||||||||||||| ||| | | ||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
51630068 |
tatagcaaaagataaaataaagttaaattgttttgatataagctataagctattttcataagctatctt |
51630136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 486 - 550
Target Start/End: Complemental strand, 55870454 - 55870390
Alignment:
| Q |
486 |
tataacaaaagataaaatatagtcagacagttttgacataagcaataagatattttcataagcta |
550 |
Q |
| |
|
||||||||||||| ||||| ||||| || ||||| |||||||| ||||| | ||||||||||||| |
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| T |
55870454 |
tataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcataagcta |
55870390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 490 - 552
Target Start/End: Complemental strand, 54325146 - 54325084
Alignment:
| Q |
490 |
acaaaagataaaatatagtcagacagttttgacataagcaataagatattttcataagctatc |
552 |
Q |
| |
|
||||||||||||||| ||||| || ||||| | |||||| ||||| |||||||| |||||||| |
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| T |
54325146 |
acaaaagataaaataaagtcaaactgttttcatataagctataagctattttcaaaagctatc |
54325084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 552
Target Start/End: Original strand, 10143129 - 10143195
Alignment:
| Q |
486 |
tataacaaaagataaaatatagtcagacagttttgacataagcaataagatattttcataagctatc |
552 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||| | |||||| ||||| | ||||||||||||||| |
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|
| T |
10143129 |
tataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataagctatc |
10143195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 552
Target Start/End: Complemental strand, 17952814 - 17952748
Alignment:
| Q |
486 |
tataacaaaagataaaatatagtcagacagttttgacataagcaataagatattttcataagctatc |
552 |
Q |
| |
|
||||||||||||||||||| ||||| || |||| | |||||| | ||||| ||||||||||||||| |
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|
| T |
17952814 |
tataacaaaagataaaataaagtcaaactattttcatataagctacaagatgttttcataagctatc |
17952748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 552
Target Start/End: Complemental strand, 18962151 - 18962085
Alignment:
| Q |
486 |
tataacaaaagataaaatatagtcagacagttttgacataagcaataagatattttcataagctatc |
552 |
Q |
| |
|
||||||||||||||||||| ||| | || ||||| | |||||| |||| ||||||||||||||||| |
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|
| T |
18962151 |
tataacaaaagataaaataaagttaaactgttttcatataagctataaactattttcataagctatc |
18962085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 538 - 601
Target Start/End: Complemental strand, 34652097 - 34652030
Alignment:
| Q |
538 |
ttttcataagctatctt----aggttttggaaataagttgaaaacagctcatggacaattcataagtt |
601 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||||||||||| ||||||| ||||||||| |
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| T |
34652097 |
ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagtt |
34652030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 601
Target Start/End: Original strand, 7714281 - 7714318
Alignment:
| Q |
564 |
aaataagttgaaaacagctcatggacaattcataagtt |
601 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||| |
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| T |
7714281 |
aaataagttgaaaacagctcatcgacatttcataagtt |
7714318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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