View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4852_low_1 (Length: 518)
Name: NF4852_low_1
Description: NF4852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4852_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 504
Target Start/End: Complemental strand, 2526719 - 2526232
Alignment:
| Q |
17 |
acaatcttacccttgatgaagttcagaatcacttaggtgacttaggaaagccactaagtagtatgaaccttgacgagcttctgaaaaatgtatggactgt |
116 |
Q |
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| T |
2526719 |
acaatcttacccttgatgaagttcagaatcacttaggtgacttaggaaagccactaagtagtatgaaccttgacgagcttctgaaaaatgtatggactgt |
2526620 |
T |
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| Q |
117 |
tgaggcaaaccaatcaattcgcatggaaaacgagaacacagctcaagccggacaagttgtttttcaacgtcaacctaatctgtcattaaccggtccgtta |
216 |
Q |
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| T |
2526619 |
tgaggcaaaccaatcaattcgcatggaaaacgagaacacagctcaagccggagaagttgtttttcaacgtcaacctaatctgtcgttaaccggtccgtta |
2526520 |
T |
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| Q |
217 |
agcaagaagacagttgatgaagtttggagagatatccaacaaagcaacgatcatgaggaggtgaagtctcaagagatacaatctactttgggtgagatga |
316 |
Q |
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| T |
2526519 |
agcaagaagacagttgatgaagtttggagagatatccaacaaagcaacgatcatgaggaggtgaagtctcaagagatacaatctactttgggtgagatga |
2526420 |
T |
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| Q |
317 |
cattagaggattttttggtgaaagcaggcgttgtttcggctgcatcttcaaatagaaagaatactaatggtcctactcctaaagtcagtgttgttgaatc |
416 |
Q |
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| T |
2526419 |
cattagaggattttttggtgaaagcaggcgttgtttcagctgcatcttcaaatagaaaaaatactaatggtcctactcctaaagtcagtgttgttgaatc |
2526320 |
T |
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| Q |
417 |
gaatgtagcattgccacaattttctccacatggtccgtggatacagtatgcacaaccacactatcagcatccacaacaaagtgtgatg |
504 |
Q |
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| T |
2526319 |
gaatgtagcgttgccacagttttctccacatggtccgtggatacagtatgcacaaccacactatcagcatccacaacaaagtgtgatg |
2526232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 16810970 - 16811061
Alignment:
| Q |
28 |
cttgatgaagttcagaatcacttaggtgacttaggaaagccactaagtagtatgaaccttgacgagcttctgaaaaatgtatggactgttga |
119 |
Q |
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| T |
16810970 |
cttgatgaagttcaaaatcaattaggtgacttagggaagccactaagcagtatgaacctagacgagcttctaaaaaatgtatggactgttga |
16811061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 217 - 344
Target Start/End: Original strand, 16811159 - 16811286
Alignment:
| Q |
217 |
agcaagaagacagttgatgaagtttggagagatatccaacaaagcaacgatcatgaggaggtgaagtctcaagagatacaatctactttgggtgagatga |
316 |
Q |
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||||||||||| || ||||| |||||||||||||||||||||| || || ||||| |||||| | ||||| |||| ||||||| || ||||||| |
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| T |
16811159 |
agcaagaagactgtggatgaggtttggagagatatccaacaaaagaaagacagcgaggaaaagaagtcacgagagagacaaactactttaggagagatga |
16811258 |
T |
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| Q |
317 |
cattagaggattttttggtgaaagcagg |
344 |
Q |
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|||| |||||||| |||||||||||||| |
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| T |
16811259 |
cattggaggatttcttggtgaaagcagg |
16811286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 498
Target Start/End: Original strand, 16811384 - 16811428
Alignment:
| Q |
454 |
tggatacagtatgcacaaccacactatcagcatccacaacaaagt |
498 |
Q |
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| T |
16811384 |
tggatacagtatccacaaccacaatatcagcatctacaacaaagt |
16811428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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