View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4852_low_2 (Length: 484)
Name: NF4852_low_2
Description: NF4852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4852_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 33800089 - 33799626
Alignment:
| Q |
19 |
aatgacttgtattttaatggtaact-aatgagaagtatgtcaaataagtgattaattgcatacnnnnnnnn----gtcaagattaattgcatacatttta |
113 |
Q |
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| T |
33800089 |
aatgacttgtattttaatggtaacttaatgagaaatatgtcaaataagtgattaattgcatacttttttttttttgtcaagattaattgcatgcatttta |
33799990 |
T |
|
| Q |
114 |
gtggctcatgaagtactataatgtggttagcgatggatatccatttttgtgtcaaattaaagtctttgttcgaataacacagttgtattcagaaatctcc |
213 |
Q |
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|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33799989 |
gtggctcatgaagtcctataatgcggttaacgatggatatccatttttgtgtcaaattaaagtctttgttcgaataacacagttgtattcagaaatctcc |
33799890 |
T |
|
| Q |
214 |
cggtacggcaaatgcattgtgacatactacaagtaatttactggagttcataaattactactagttgataaaatgatttaataagatattggcatttgct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33799889 |
cggtacggcaaatgcattgtgacatactacaagtaatttactggagttcataaattactactagttgataaaatgatttaataagatattggcatttgct |
33799790 |
T |
|
| Q |
314 |
catactgagaggccacggttgttaattcatgacagctcttaattaagatatttcagtatttttattgtgggattaaattgtactgt--aaaccatcatca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33799789 |
catactgagaggccacggttgttaattcatgacagctcctaattaagaaatttcagtatttttattgtgggattaaattgtactgtaaaaaccatcatca |
33799690 |
T |
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| Q |
412 |
aatcaagggaaaataaaagataatgatcccatataacccaatcagtaagtatcacaggttctgc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33799689 |
aatcaagggaaaataaaagataatgatcccatataacccaatcagtaagtatcacatgttctgc |
33799626 |
T |
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