View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4852_low_3 (Length: 448)

Name: NF4852_low_3
Description: NF4852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4852_low_3
NF4852_low_3
[»] chr8 (45 HSPs)
chr8 (13-421)||(4887262-4887674)
chr8 (13-253)||(4826357-4826600)
chr8 (15-253)||(4692147-4692385)
chr8 (13-253)||(4919625-4919869)
chr8 (15-220)||(4684195-4684400)
chr8 (13-253)||(4729113-4729353)
chr8 (13-253)||(4773245-4773493)
chr8 (13-253)||(4739865-4740105)
chr8 (31-220)||(4753008-4753197)
chr8 (13-231)||(4801433-4801655)
chr8 (287-421)||(4691684-4691820)
chr8 (310-430)||(4773730-4773850)
chr8 (15-266)||(4708843-4709094)
chr8 (307-421)||(4920467-4920581)
chr8 (307-430)||(4792000-4792123)
chr8 (13-237)||(4846736-4846964)
chr8 (308-421)||(4827053-4827166)
chr8 (305-421)||(4898222-4898338)
chr8 (15-194)||(4719097-4719276)
chr8 (307-421)||(4683664-4683778)
chr8 (307-421)||(4801855-4801969)
chr8 (307-421)||(4847160-4847274)
chr8 (324-421)||(4728618-4728715)
chr8 (324-421)||(4752490-4752587)
chr8 (309-430)||(4910514-4910635)
chr8 (301-430)||(4718290-4718416)
chr8 (307-421)||(4871416-4871530)
chr8 (324-430)||(4705870-4705976)
chr8 (324-421)||(4739354-4739451)
chr8 (309-430)||(10449712-10449833)
chr8 (305-421)||(21437138-21437254)
chr8 (15-105)||(4791108-4791198)
chr8 (13-93)||(4897799-4897879)
chr8 (13-91)||(4910045-4910123)
chr8 (28-91)||(21436694-21436757)
chr8 (13-90)||(4870126-4870203)
chr8 (13-93)||(10450583-10450663)
chr8 (13-93)||(10455009-10455089)
chr8 (137-229)||(4791422-4791514)
chr8 (150-248)||(4870266-4870364)
chr8 (150-202)||(4897936-4897988)
chr8 (148-200)||(4910180-4910232)
chr8 (147-203)||(10450282-10450338)
chr8 (147-203)||(10454708-10454764)
chr8 (148-202)||(21436814-21436868)
[»] chr5 (1 HSPs)
chr5 (25-77)||(24000639-24000691)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 421
Target Start/End: Original strand, 4887262 - 4887674
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaat---ccagactaagtgcaatgta 109  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||    
T  4887262 aatatgttggatggtttcaaatctctgtgcataataggtggtttacatccattatgcagatactccaatcctgaaaattatccacactaagtgcaatgta 4887361  T
Q  110 agggtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcgg 209  Q
    |||||||| || | ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||| |     
T  4887362 agggtacataatgcaagaaagattttgtcataaacaatacattaccatatgctgcatcaactgcaatgttaagtctctcattccaatttaagatctttga 4887461  T
Q  210 attttccactgtatgcaaataggcattagtattgaaattctga--agaagtcttttaaaagagaaatcatatgaaattctgaccttgcagataaaatata 307  Q
    ||||||||||| ||||| ||||||||| | ||||||| |||||  ||||   |||  |||  |||| ||||||||||||| ||  |||  || |||||||    
T  4887462 attttccactgcatgcatataggcatttgaattgaaa-tctgaacagaaaggtttctaaaacgaaagcatatgaaattctaacaatgccaatcaaatata 4887560  T
Q  308 attacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaaa 407  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4887561 attacctaataattgttgttgcagatttccattagccatgtattcataaatcaatgctttgatttcaccttcattacaatatccaatgagggagaccaaa 4887660  T
Q  408 tttctatgatgaac 421  Q
    ||||||||||||||    
T  4887661 tttctatgatgaac 4887674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 4826357 - 4826600
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagg 112  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||||||||||||| || ||||| ||||||||||||    
T  4826357 aatatgttggatggtttcaaatctctatgtaaaataggtggtttacatccattatgcatataatccaatcctgaaaattcacactaattgcaatgtaagg 4826456  T
Q  113 gtacacaacggaag-aaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggat 211  Q
    |||||||| | ||| ||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |  |    
T  4826457 gtacacaatgcaagaaaagatgctatcataaacaatacattaccttgtgctgcatcaactgcaatgttaagtctctcgttccagtttaagatatttgagt 4826556  T
Q  212 tttccactgtatgcaaatag--gcattagtattgaaattctgaa 253  Q
    ||||||||| ||||||||||   ||||| ||||| |||||||||    
T  4826557 tttccactgcatgcaaatagacacattaatattggaattctgaa 4826600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 4692385 - 4692147
Alignment:
Q  15 tatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagggt 114  Q
    |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||| ||||| ||||| |    
T  4692385 tatgttagaaggcttcaaatctctatgcataataggtggtttacatccattatgcagataatccaatcctgaaaattcacacaaagggcaatataaggct 4692286  T
Q  115 acacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggatttt 214  Q
     || || | |||||| |||||  |||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||  | |  ||||    
T  4692285 gcaaaatgcaagaaatatgtttccataaacaatacattaccatgtgctgcatcaactgcaatcttaagcctctcattccaatttaagatagttgagtttt 4692186  T
Q  215 ccactgtatgcaaataggcattagtattgaaattctgaa 253  Q
    |||||| |||||||||| |||||||  ||||||||||||    
T  4692185 ccactgcatgcaaatagacattagtcatgaaattctgaa 4692147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 4919625 - 4919869
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctg-aaaatccagactaagtgcaatgtaag 111  Q
    |||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||| ||||| || ||| ||| |||||||||    
T  4919625 aatatgttggacggcttcaaatctctatgcataataggtggttggcatccattatgcagataatccaatcctgaaaaattcacactgagttcaatgtaag 4919724  T
Q  112 ggtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggat 211  Q
    ||||  | |   |||||||| |||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| || | |     
T  4919725 ggtaggctatacaagaaagaagttgccataaatagtacattaccgtttgctgcatcaactgcaatgttaagtctctcattccattttaagatatttgaag 4919824  T
Q  212 tttccactgtatgcaa---ataggcattagtattgaaattctgaa 253  Q
    ||||| ||| ||||||   |||||||||||| |||||| ||||||    
T  4919825 tttccgctgcatgcaaattataggcattagtcttgaaactctgaa 4919869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 4684400 - 4684195
Alignment:
Q  15 tatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagggt 114  Q
    |||||| || || ||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||| || |||||| |||||||||| ||    
T  4684400 tatgtttgaaggcttcaaatctctatgcatgatcggtggtttgcatccattatgcagataatccaatcctgaaaattcacactaagggcaatgtaagtgt 4684301  T
Q  115 acacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggatttt 214  Q
     ||||| | |||| | ||  ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| |||| |||||    
T  4684300 gcacaatgcaagacaaattctgtcataaacaatacattaccttgtgctgcgtcaactgcaatgttaagcctctcattccaatttaagatattcgaatttt 4684201  T
Q  215 ccactg 220  Q
    ||||||    
T  4684200 ccactg 4684195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 4729353 - 4729113
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagg 112  Q
    |||||||| || || |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| || |||||| |||||||||||    
T  4729353 aatatgtttgatggcttcaaatctctatgcataataggtggcttacatccattatgaagataatccaatcctgaaaattcacactaagggcaatgtaagg 4729254  T
Q  113 gtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggatt 212  Q
    |  ||||| | |||||| ||| || ||||||||||| |||||| |||||||  ||||||||||||||||| |||||||||||  ||||||| || | |||    
T  4729253 gagcacaatgcaagaaacatgctgccataaacaataaattaccatgtgctgtgtcaactgcaatgttaagcctctcattccaacttaagatatttgaatt 4729154  T
Q  213 ttccactgtatgcaaataggcattagtattgaaattctgaa 253  Q
    |||||||| ||| ||| |  ||||||| ||||||| |||||    
T  4729153 ttccactgcatgaaaacatacattagtcttgaaatactgaa 4729113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 4773245 - 4773493
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagg 112  Q
    |||||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||| | | ||||| ||||||||||||    
T  4773245 aatatgtttgaaggtttcaaatctctatgcatagtaggtggtttgcatccattatgcagataatccaatcctgcaaaacaacactaaatgcaatgtaagg 4773344  T
Q  113 gtacacaacggaagaaagatgttgtcataaacaatacatta--------ccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatc 204  Q
     | ||||| | |||||||| | |   ||||| |||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||| ||     
T  4773345 atgcacaatgcaagaaagacgattctataaataatacattaattaattaccgtgtgctgcatcaactgcaatgttaagtctctcattccaatttaacata 4773444  T
Q  205 ttcggattttccactgtatgcaaataggcattagtattgaaattctgaa 253  Q
    || | ||||||||||| |||||||||||||||||| | |||||||||||    
T  4773445 tttgaattttccactgcatgcaaataggcattagtctcgaaattctgaa 4773493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 13 - 253
Target Start/End: Complemental strand, 4740105 - 4739865
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagg 112  Q
    |||||||| || || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||||| | |||||||||    
T  4740105 aatatgtttgaaggcttcaaatctctatgcataataggaggtttacatccattatgcagataatccaatcctgaaaattcacactaaggggaatgtaagg 4740006  T
Q  113 gtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggatt 212  Q
    || ||||| | |||||| ||| |  |||||||||||||||||| |||||||  |||||||||||| |||| |||||||||||  ||||||| || | |||    
T  4740005 gtgcacaatgcaagaaacatgcttccataaacaatacattaccatgtgctgtgtcaactgcaatgctaagcctctcattccaacttaagatatttgaatt 4739906  T
Q  213 ttccactgtatgcaaataggcattagtattgaaattctgaa 253  Q
    |||||||| |||  || |  ||||||| ||||||| |||||    
T  4739905 ttccactgcatgagaacatacattagtcttgaaatactgaa 4739865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 31 - 220
Target Start/End: Complemental strand, 4753197 - 4753008
Alignment:
Q  31 aaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagggtacacaacggaagaaag 130  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  | |||||| ||||||||||||| ||||| | ||||||     
T  4753197 aaatctctatgcataataggtggtttacatccattatgcagataatccaatcctgaaaattgacactaagggcaatgtaagggtgcacaatgcaagaaac 4753098  T
Q  131 atgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggattttccactg 220  Q
    ||| || |||||||||||| ||||| |||||||  ||||||||||||||||| |||||||||||  ||||||| || | |||||| ||||    
T  4753097 atgctgccataaacaatactttaccatgtgctgtgtcaactgcaatgttaagcctctcattccaacttaagatatttgaattttctactg 4753008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 4801433 - 4801655
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagac----taagtgcaatgt 108  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||    ||||||| ||||    
T  4801433 aatatgttggaagacttcaaatctctatgcataataggtggtttacacccattatgcagataatccaatcctgaaaatccacactaattaagtgctatgt 4801532  T
Q  109 aagggtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcg 208  Q
    ||||||||   | | ||||||||| |||  ||||| | ||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||| || |    
T  4801533 aagggtactttatgcaagaaagattttgcaataaatagtacattaccatgtgctgcatcaactgcaattttaagtctcttagtccagtttaagatatttg 4801632  T
Q  209 gattttccactgtatgcaaatag 231  Q
     ||||||||||| ||| ||||||    
T  4801633 aattttccactgcatgaaaatag 4801655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 287 - 421
Target Start/End: Complemental strand, 4691820 - 4691684
Alignment:
Q  287 tgaccttgcagataaaatataa--ttacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattac 384  Q
    |||| |||| ||||||||||||  ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||    
T  4691820 tgacattgctgataaaatataaaattaccaaataagtgttgttggagatttccattggccatatattcataaatcaatgctttgatttcaccttcatcac 4691721  T
Q  385 aatatccaatgagggagaccaaatttctatgatgaac 421  Q
    ||||||||||||| || ||||||||||||||||||||    
T  4691720 aatatccaatgagagataccaaatttctatgatgaac 4691684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 310 - 430
Target Start/End: Original strand, 4773730 - 4773850
Alignment:
Q  310 tacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaaatt 409  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||  ||||||||||||||    
T  4773730 tacctaataaatgttgttggagatttccattggccatgtattcataaattaatgctttgatttcaccttcatcacaatatccaacaagggagaccaaatt 4773829  T
Q  410 tctatgatgaacgaccgttag 430  Q
    |||||||||||| || |||||    
T  4773830 tctatgatgaacaactgttag 4773850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 4709094 - 4708843
Alignment:
Q  15 tatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagggt 114  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || | |||| |||||||| ||||    
T  4709094 tatgttggaaggcttcaaatctctatgcatgataggtggtttacatccattatgcagataatccaatcctgaaaattcacattaagggcaatgtacgggt 4708995  T
Q  115 acacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggatttt 214  Q
    ||| || | |||||| |||  | |  ||||||||||||||| || ||||  ||||| ||||||||||| |||| ||||||  ||||| | || | |||||    
T  4708994 acaaaatgcaagaaatatgacgccgaaaacaatacattaccatgggctgtgtcaacagcaatgttaagcctctgattccaacttaaggtatttgaatttt 4708895  T
Q  215 ccactgtatgcaaataggcattagtattgaaattctgaagaagtcttttaaa 266  Q
    | |||| ||||||| |  ||||||  ||||||| ||||| |||  |||||||    
T  4708894 ctactgcatgcaaacatacattagctttgaaatactgaacaagcattttaaa 4708843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 4920467 - 4920581
Alignment:
Q  307 aattacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaa 406  Q
    ||||||||  ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||||    
T  4920467 aattaccttgtaagtgttgttggagatttccattggccatgtattcataaaccaatgctttgatttcaccttcatcacaatatccgatgagagagaccaa 4920566  T
Q  407 atttctatgatgaac 421  Q
    |||||||||||||||    
T  4920567 atttctatgatgaac 4920581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 307 - 430
Target Start/End: Original strand, 4792000 - 4792123
Alignment:
Q  307 aattacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaa 406  Q
    |||||||| |||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||| |||||||| ||||||||    
T  4792000 aattacctgataaatgttgttgtagatttccattggccatgtactcataaatcaatgctttaatttcaccttcatcacaatacccaatgagagagaccaa 4792099  T
Q  407 atttctatgatgaacgaccgttag 430  Q
    ||||||||||||||| | ||||||    
T  4792100 atttctatgatgaacaatcgttag 4792123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 4846736 - 4846964
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatcca----gactaagtgcaatgt 108  Q
    ||||||||||| |  |||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||| |||     | ||||||| ||||    
T  4846736 aatatgttggaagacttcaaatctctatgaataataggtggtttgcacccattatgcagataatccaatcctgaaaacccacaataattaagtgctatgt 4846835  T
Q  109 aagggtacacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcg 208  Q
    |||||||  | | | ||||||||| |||  ||||| | ||||||||| |||||||||||||||||||| |||||||||| | |||| |||| ||| || |    
T  4846836 aagggtaatctatgcaagaaagattttgcaataaatagtacattaccatgtgctgcatcaactgcaattttaagtctcttagtccaatttatgatatttg 4846935  T
Q  209 gattttccactgtatgcaaataggcatta 237  Q
     ||||||||||| ||| |||||| |||||    
T  4846936 aattttccactgcatgaaaatagacatta 4846964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 308 - 421
Target Start/End: Original strand, 4827053 - 4827166
Alignment:
Q  308 attacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaaa 407  Q
    |||||| ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  4827053 attaccaaataaatgctgttggagatttccatttgccatatattcataaatcaatgctttgatttccccttcatcacaatacccaatgagtgagaccaaa 4827152  T
Q  408 tttctatgatgaac 421  Q
    |||| |||||||||    
T  4827153 tttcgatgatgaac 4827166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 305 - 421
Target Start/End: Original strand, 4898222 - 4898338
Alignment:
Q  305 ataattacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagacc 404  Q
    ||||||||||| ||| |||| |||||||||||| ||||||||||||||||||| |||||||||| |||  ||||||| ||||||||||||||| ||||||    
T  4898222 ataattacctattaagtgttattggagatttcctttggccatgtattcataaaccaatgctttgcttttgccttcatcacaatatccaatgagagagacc 4898321  T
Q  405 aaatttctatgatgaac 421  Q
    |||||||||||||||||    
T  4898322 aaatttctatgatgaac 4898338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 4719276 - 4719097
Alignment:
Q  15 tatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaatgtaagggt 114  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  | | |||| | |||| | || |    
T  4719276 tatgttggaaggcttcaaatctctatgcataataggtggtttacatccattatgcagataatccaatcctgaaaattaacattaagggaaatgcacggat 4719177  T
Q  115 acacaacggaagaaagatgttgtcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattcca 194  Q
    ||| || | |||||| | |  | || ||||||||||||||| || ||||  ||||||||||||||||| |||||||||||    
T  4719176 acaaaatgcaagaaatacgacgccaaaaacaatacattaccatgggctgtgtcaactgcaatgttaagcctctcattcca 4719097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 307 - 421
Target Start/End: Complemental strand, 4683778 - 4683664
Alignment:
Q  307 aattacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaa 406  Q
    |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||| ||| ||||||| ||| ||||||||    
T  4683778 aattacctaacaaatgttgttggagatttcctttggccatgtattcataaatcaatgctttgatttcagtttcatcacagtatccaaggagagagaccaa 4683679  T
Q  407 atttctatgatgaac 421  Q
    |||||||||||||||    
T  4683678 atttctatgatgaac 4683664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 4801855 - 4801969
Alignment:
Q  307 aattacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaa 406  Q
    ||||||||||||| | |||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||     
T  4801855 aattacctaataaatattgttggagatttccattcgccatgtactcataaatcagtgctttgatttcaccttcatcacaatatccaatgagagagaccag 4801954  T
Q  407 atttctatgatgaac 421  Q
    ||| |||||||||||    
T  4801955 attcctatgatgaac 4801969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 4847160 - 4847274
Alignment:
Q  307 aattacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaa 406  Q
    ||||||||||||| | |||||||||||||||||| | |||||| |||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||||    
T  4847160 aattacctaataaatattgttggagatttccattcgtcatgtactcataaatcagtgctttgatttcaccttcatcacaatatccaatgagagagaccaa 4847259  T
Q  407 atttctatgatgaac 421  Q
    ||| |||||||||||    
T  4847260 attcctatgatgaac 4847274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 324 - 421
Target Start/End: Complemental strand, 4728715 - 4728618
Alignment:
Q  324 tgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaaatttctatgatgaac 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||| ||||| | |||||||||||||||||||||    
T  4728715 tgttggagatttccattggccatgtattcataaatcaatgctttgatttgaccttcatcacaatatccgatgagagggaccaaatttctatgatgaac 4728618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 324 - 421
Target Start/End: Complemental strand, 4752587 - 4752490
Alignment:
Q  324 tgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaaatttctatgatgaac 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  4752587 tgttggagatttccattggccatgtattcataaatcaatgctttggtttgaccttcatcacaatatccaaggagggggaccaaatttctatgatgaac 4752490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 309 - 430
Target Start/End: Original strand, 4910514 - 4910635
Alignment:
Q  309 ttacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaaat 408  Q
    |||| |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||||| |||||| || ||||| ||||||||||    
T  4910514 ttacttaataagtgttgttgaacatttccattggccatgtattcataaatcaatgctttgatttcatcttcatcacaataaccgatgagagagaccaaat 4910613  T
Q  409 ttctatgatgaacgaccgttag 430  Q
    ||||||||||||| ||| ||||    
T  4910614 ttctatgatgaacaaccattag 4910635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 301 - 430
Target Start/End: Complemental strand, 4718416 - 4718290
Alignment:
Q  301 aaatataattacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgaggga 400  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||  ||||||||||||||| |||  ||||||| |||||||||||  ||||     
T  4718416 aaatataattacctaataattgttg---gagatttccattggccatgtatttgtaaatcaatgctttggtttgaccttcatcacaatatccaagtagggg 4718320  T
Q  401 gaccaaatttctatgatgaacgaccgttag 430  Q
    ||||||||||||||||||||| ||| ||||    
T  4718319 gaccaaatttctatgatgaacaaccattag 4718290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 4871416 - 4871530
Alignment:
Q  307 aattacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaa 406  Q
    ||||||| ||||| |||||||||||| ||||||| | ||||||||||||||||||||||||| ||||  ||||||  |||||||||||||| ||||||||    
T  4871416 aattaccaaataagtgttgttggagacttccatttgtcatgtattcataaatcaatgctttgttttcatcttcatcgcaatatccaatgagagagaccaa 4871515  T
Q  407 atttctatgatgaac 421  Q
    |||||||||||||||    
T  4871516 atttctatgatgaac 4871530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 324 - 430
Target Start/End: Complemental strand, 4705976 - 4705870
Alignment:
Q  324 tgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaaatttctatgatgaacga 423  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||  ||||||| ||||||||||| ||| | ||||||||||||||||||||| |    
T  4705976 tgttggagatttccattggtcatgtattcgtaaatcaatgctttgatttgaccttcatcacaatatccaaggagagggaccaaatttctatgatgaacaa 4705877  T
Q  424 ccgttag 430  Q
     ||||||    
T  4705876 tcgttag 4705870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 324 - 421
Target Start/End: Complemental strand, 4739451 - 4739354
Alignment:
Q  324 tgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaaatttctatgatgaac 421  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||| ||||||||||| |||||  ||||||||||||||||||||    
T  4739451 tgttgcagatttccattggccatgtattcataaatcaatgctctgatttgaccttcatcacaatatccaaggaggggaaccaaatttctatgatgaac 4739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 309 - 430
Target Start/End: Complemental strand, 10449833 - 10449712
Alignment:
Q  309 ttacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagaccaaat 408  Q
    ||||| ||||| |||||| ||||||||||||| |||||||||||||| ||||||||||| | ||| ||||||| ||||||||||| ||| |||||||||     
T  10449833 ttaccaaataagtgttgtaggagatttccattagccatgtattcatagatcaatgctttaacttcaccttcatcacaatatccaacgagagagaccaaac 10449734  T
Q  409 ttctatgatgaacgaccgttag 430  Q
    ||||||||||||| | ||||||    
T  10449733 ttctatgatgaacaatcgttag 10449712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 421
Target Start/End: Original strand, 21437138 - 21437254
Alignment:
Q  305 ataattacctaataattgttgttggagatttccattggccatgtattcataaatcaatgctttgatttccccttcattacaatatccaatgagggagacc 404  Q
    |||||||||||| || |||||||| | |||||| ||| |||||||||||||||||||||| ||  |||| ||||||| |||||| |||||||| ||||||    
T  21437138 ataattacctaacaagtgttgttgaacatttccgttgcccatgtattcataaatcaatgcctttttttcaccttcatcacaatacccaatgagagagacc 21437237  T
Q  405 aaatttctatgatgaac 421  Q
    |||||||||||||||||    
T  21437238 aaatttctatgatgaac 21437254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 4791108 - 4791198
Alignment:
Q  15 tatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatccagactaagtgcaa 105  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| || ||||||||    
T  4791108 tatgttggaaggcttcaaatctctatgcataataggtggtttacatccattatgtaaataatccaatcctgaaaatccacaccaagtgcaa 4791198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 4897799 - 4897879
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatcca 93  Q
    ||||||||||  || ||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  4897799 aatatgttggtaggcttcgaatctctatgcataataggtggattacatccattatgcagatattccaatcctgaaaatcca 4897879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 4910045 - 4910123
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatc 91  Q
    ||||||||||  || ||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  4910045 aatatgttggtaggcttcaaatctctgtgcataatagctggtttacatccattatgcagatattccaatcctgaaaatc 4910123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 21436694 - 21436757
Alignment:
Q  28 ttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatc 91  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||    
T  21436694 ttcaaatctctatgcataattgctggtttacatccattatgcagatattccaatcctgaaaatc 21436757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 4870126 - 4870203
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaat 90  Q
    ||||||||||| || |||| ||||||||||||||||||| | ||||| |||||||| |||||||||||||||||||||    
T  4870126 aatatgttggaaggcttcatatctctatgcataataggtagattacacccattatgaagatactccaatcctgaaaat 4870203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 10450663 - 10450583
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatcca 93  Q
    ||||||||||  || |||||||| ||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||    
T  10450663 aatatgttggcaggcttcaaatccctatgcataatcggtggtttacatccatcatgtagatattccaatcctgaaaatcca 10450583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 10455089 - 10455009
Alignment:
Q  13 aatatgttggacggtttcaaatctctatgcataataggtggtttacatccattatgcagatactccaatcctgaaaatcca 93  Q
    ||||||||||  || |||||||| ||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||    
T  10455089 aatatgttggcaggcttcaaatccctatgcataatcggtggtttacatccatcatgtagatattccaatcctgaaaatcca 10455009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 4791422 - 4791514
Alignment:
Q  137 tcataaacaatacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggattttccactgtatgcaaat 229  Q
    ||||||| | ||||||||| | ||||| ||||||||||||||| ||||||||| ||||||| ||||  || | ||||||||||| ||||||||    
T  4791422 tcataaatagtacattaccatatgctgtatcaactgcaatgttgagtctctcagtccagttcaagacatttgaattttccactgcatgcaaat 4791514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 4870266 - 4870364
Alignment:
Q  150 attaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagatcttcggattttccactgtatgcaaataggcattagtattgaaatt 248  Q
    |||||| |||||||||||||||||||| || |||||||||||||| |||||||| |  | ||| ||  ||| | |||||||||||||| | ||||||||    
T  4870266 attaccatgtgctgcatcaactgcaattttgagtctctcattccattttaagatatgtgtattatcatctgcacgcaaataggcattaatcttgaaatt 4870364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 4897936 - 4897988
Alignment:
Q  150 attaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaaga 202  Q
    |||||| |||||||||||||||||||| || |||||||||||||| |||||||    
T  4897936 attaccatgtgctgcatcaactgcaattttgagtctctcattccattttaaga 4897988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 4910180 - 4910232
Alignment:
Q  148 acattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaa 200  Q
    |||||||| |||||||||||||||||||| || |||||||||||||| |||||    
T  4910180 acattaccatgtgctgcatcaactgcaatttttagtctctcattccattttaa 4910232  T

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Target: chr8; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 10450338 - 10450282
Alignment:
Q  147 tacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagat 203  Q
    ||||||||| |||||||||||||| ||||| || |||||||||||||| || |||||    
T  10450338 tacattaccatgtgctgcatcaaccgcaattttgagtctctcattccatttcaagat 10450282  T

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Target: chr8; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 10454764 - 10454708
Alignment:
Q  147 tacattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaagat 203  Q
    ||||||||| |||||||||||||| ||||| || |||||||||||||| || |||||    
T  10454764 tacattaccatgtgctgcatcaaccgcaattttgagtctctcattccatttcaagat 10454708  T

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Target: chr8; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 21436814 - 21436868
Alignment:
Q  148 acattaccgtgtgctgcatcaactgcaatgttaagtctctcattccagtttaaga 202  Q
    |||||||| | ||||||||||||||| || || |||||||||||||| |||||||    
T  21436814 acattaccatatgctgcatcaactgcgattttgagtctctcattccattttaaga 21436868  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 24000691 - 24000639
Alignment:
Q  25 ggtttcaaatctctatgcataataggtggtttacatccattatgcagatactc 77  Q
    |||||||||||||| || || |||| ||| || ||||||||||||||||||||    
T  24000691 ggtttcaaatctctgtggattatagctggcttgcatccattatgcagatactc 24000639  T

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