View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4852_low_7 (Length: 268)
Name: NF4852_low_7
Description: NF4852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4852_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 32104280 - 32104128
Alignment:
| Q |
19 |
catttatcatcgttgtactcataataatctctagttgtgttttattactgtttgtgctacacnnnnnnnnatatattatctcgtacaatcaaaaaccaag |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32104280 |
catttatcattgttgtactcataataatctctagttgtgttttattactgtttgtgctacacttttttttatatattatctcgtacaatcaaaaaccaag |
32104181 |
T |
|
| Q |
119 |
ctagctggcgccctcaaaatgactaacacaactaactaacaaaccaaactatg |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32104180 |
ctagctggcgccctcaaaatgactaacacaactaactaacaaaccaaactatg |
32104128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 32104098 - 32104041
Alignment:
| Q |
203 |
gtagcacccaaaaactggctggtagaccaaccagtcaaaaaatactccctcctttgct |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32104098 |
gtagcacccaaaaactggctggtagaccaaccagtcaaaaaatactccctcctttgct |
32104041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University