View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4853-Insertion-3 (Length: 941)
Name: NF4853-Insertion-3
Description: NF4853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4853-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 630; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 206 - 937
Target Start/End: Complemental strand, 5714125 - 5713395
Alignment:
| Q |
206 |
agtccaaatggaatatcctattacaccatgcaatatcaagtttatttggagtgtcatcaaaattcaaaataaaacaatttattgctgccattcagtagtt |
305 |
Q |
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| T |
5714125 |
agtccaaatggaatatcctattacaccatgcaatatcaagtttatttggagtgtcatcaaaattcaaaataaaacaatttattgctgccattcagtagtt |
5714026 |
T |
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| Q |
306 |
ggctacatacataccggtctttgctcaaaaggaacttcaatttccaacccaggatcccagctacctcctgaagatccacttgtttctccattcatctcac |
405 |
Q |
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| T |
5714025 |
ggctacatacataccggtctttgctcaaaaggaacttcaatttccaacccaggatcccagctacctcctgaagatccacttgtttctccattcatctcac |
5713926 |
T |
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| Q |
406 |
cttttacggccttaactttaatggaaacctgttgagaaaattttgaagctcttggattttggatgatgaacgaaccatggttgcttcctggtttagtttg |
505 |
Q |
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| T |
5713925 |
cttttacggccttaactttaatggaaacctgttgagaaaattttgaagctcttggattttggatgatgaacgaaccatggttgcttcctggtttagtttg |
5713826 |
T |
|
| Q |
506 |
tcttgcagttggaattagagaacagtgaaaatttagtctaatcatttgcttgttgaattttaacagtaagcatataactaaacc--nnnnnnnnnnnnnc |
603 |
Q |
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| T |
5713825 |
tcttgcagttggaattagagaacagtgaaaatttagtctaatcatttgcttgttgaattttaatagtaagcatataactaaaccaaaaaaaaaaaaaaac |
5713726 |
T |
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| Q |
604 |
aaggtggtgttcaattctttactgggagaaggaagaggaggaaagaattgatattatgcactgattaaaaccaattatttgtaattatttttgtgtcttc |
703 |
Q |
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| T |
5713725 |
aaggtggtgttcaattctttactgggagaaggaagaggaggaaagaattgatattatgcactgattaaaaccaattatttgtaattatttttgtgtcttc |
5713626 |
T |
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| Q |
704 |
gtaccagggaccacataaattatttacgtgtaggaggggcaagtaaataatgtttgtgcatattttctagatannnnnnncatagagaactataaagagc |
803 |
Q |
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| T |
5713625 |
gtacca-ggaccacataaattatttacgtgtagga-gggcaagtaaataatgtttgtgcatattttctagata-ttttttcatagagaactagagagagc |
5713529 |
T |
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| Q |
804 |
cttgccacttcgttattatgtggacaaagcttctcgtccacgtgtgcttcttattcaccgttcatctgatgcggttaacgtccttaggagtacttagatt |
903 |
Q |
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| T |
5713528 |
cttgccacttcgttattatgtggacaaagcttctcgtccacgtgtgcttcttattcaccgttcatctgatgcggttaacgtccttaggagtacttagatt |
5713429 |
T |
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| Q |
904 |
atccgaatctaatttattttgtgcactttatatt |
937 |
Q |
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| T |
5713428 |
atccgaatctaatttattttgtgcactttatatt |
5713395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 5714324 - 5714229
Alignment:
| Q |
6 |
cagggatatgaaactcactaactgtcatgctttctgatggctaggttcagccatgaaattcaatattcatactctaatattacacataattcaata |
101 |
Q |
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| T |
5714324 |
cagggatatgaaactcactaactgtcatgctttctgatggctaggttcagccatgaaattcaatattcatactctaatattacacataattcaata |
5714229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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