View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4853-Insertion-4 (Length: 469)

Name: NF4853-Insertion-4
Description: NF4853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4853-Insertion-4
NF4853-Insertion-4
[»] chr4 (1 HSPs)
chr4 (8-469)||(51360779-51361240)


Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Original strand, 51360779 - 51361240
Alignment:
Q  8 caagcttgccatgtttgccacaaatcctatgttatcaagcaacatcattgctgcaatcgaaacataaatgaatttcggtttatttcaaaaacaaattaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51360779 caagcttgccatgtttgccacaaatcctatgttatcaagcaacatcattgctgcaatcgaaacataaatgaatttcggtttatttcaaaaacaaattaaa 51360878  T
Q  108 ggaattgtgatgaacatatgtagtttacccaccaaagatgaaatgagtagctctatatcctccttgtttcggtttacttactgcttggtactcaacatct 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51360879 ggaattgtgatgaacatatatagtttacccaccaaagatgaaatgagtagctctatatcctccttgtttcggtttacttactgcttggtactcaacatct 51360978  T
Q  208 ttaacattagtctcatcttttgaatcctgtattttaaaatcaacacattttaagcatatagtttaaaaaatggtgagaaccatttttgtgagatatacta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51360979 ttaacattagtctcatcttttgaatcctgtattttaaaatcaacacattttaagcatatagtttaaaaaatggtgagaaccatttttgtgagatatacta 51361078  T
Q  308 ttggagaatgattcaataacttcaacaaaaagaagttgaagacgaatatgatgatggttgcataaatcattctgtgtagacacactaaattttatgttcg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  51361079 ttggagaatgattcaataacttcaacaaaaagaagttgaagacgaatatgatgatggttgcataaataattttgtgtagacacgctaaattttatgttcg 51361178  T
Q  408 attcactcaatcagtttatacaaactctatgcgatagaaataaccgtgaatgccttcatgaa 469  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  51361179 attcactcaatcagtttatacaaactttatgcgatagatataaccgtgaatgccttcatgaa 51361240  T

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